Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4482 and GFF4483 are separated by 306 nucleotides GFF4483 and GFF4484 are separated by 192 nucleotides
GFF4482 - Flagellar M-ring protein, at 61,634 to 63,301
GFF4482
GFF4483 - hypothetical protein, at 63,608 to 64,651
GFF4483
GFF4484 - Flagellar biosynthetic protein FliP, at 64,844 to 65,671
GFF4484
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 62.775 kb on - strand, within GFF4482 at 62.909 kb on + strand, within GFF4482 at 62.919 kb on - strand, within GFF4482 at 62.973 kb on + strand, within GFF4482 at 62.974 kb on - strand, within GFF4482 at 63.148 kb on - strand at 63.177 kb on + strand at 63.178 kb on - strand at 63.178 kb on - strand at 63.389 kb on - strand at 63.873 kb on + strand, within GFF4483 at 63.873 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.975 kb on + strand, within GFF4483 at 63.976 kb on - strand, within GFF4483 at 63.976 kb on - strand, within GFF4483 at 63.976 kb on - strand, within GFF4483 at 64.016 kb on - strand, within GFF4483 at 64.128 kb on + strand, within GFF4483 at 64.128 kb on + strand, within GFF4483 at 64.129 kb on - strand, within GFF4483 at 64.186 kb on + strand, within GFF4483 at 64.308 kb on + strand, within GFF4483 at 64.308 kb on + strand, within GFF4483 at 64.308 kb on + strand, within GFF4483 at 64.516 kb on - strand, within GFF4483 at 64.516 kb on - strand, within GFF4483 at 64.516 kb on - strand, within GFF4483 at 64.802 kb on + strand at 64.803 kb on - strand at 64.835 kb on - strand at 65.084 kb on + strand, within GFF4484 at 65.084 kb on + strand, within GFF4484 at 65.084 kb on + strand, within GFF4484 at 65.085 kb on - strand, within GFF4484 at 65.085 kb on - strand, within GFF4484 at 65.322 kb on + strand, within GFF4484 at 65.323 kb on - strand, within GFF4484 at 65.323 kb on - strand, within GFF4484 at 65.323 kb on - strand, within GFF4484 at 65.403 kb on + strand, within GFF4484 at 65.570 kb on + strand, within GFF4484 at 65.570 kb on + strand, within GFF4484
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 62,775 - GFF4482 0.68 -2.0 62,909 + GFF4482 0.76 -0.9 62,919 - GFF4482 0.77 -1.2 62,973 + GFF4482 0.80 -1.2 62,974 - GFF4482 0.80 -1.9 63,148 - -2.8 63,177 + -1.2 63,178 - +0.3 63,178 - -1.9 63,389 - +0.4 63,873 + GFF4483 0.25 +0.3 63,873 + GFF4483 0.25 +0.1 63,975 + GFF4483 0.35 -0.1 63,975 + GFF4483 0.35 -1.4 63,975 + GFF4483 0.35 -1.9 63,975 + GFF4483 0.35 -1.3 63,976 - GFF4483 0.35 -0.8 63,976 - GFF4483 0.35 +0.9 63,976 - GFF4483 0.35 +0.6 64,016 - GFF4483 0.39 -1.5 64,128 + GFF4483 0.50 -1.0 64,128 + GFF4483 0.50 -1.2 64,129 - GFF4483 0.50 -1.8 64,186 + GFF4483 0.55 +0.0 64,308 + GFF4483 0.67 +0.3 64,308 + GFF4483 0.67 -1.0 64,308 + GFF4483 0.67 -2.5 64,516 - GFF4483 0.87 -1.6 64,516 - GFF4483 0.87 +0.5 64,516 - GFF4483 0.87 -2.4 64,802 + +0.3 64,803 - -0.7 64,835 - -1.0 65,084 + GFF4484 0.29 -0.5 65,084 + GFF4484 0.29 -0.5 65,084 + GFF4484 0.29 -0.6 65,085 - GFF4484 0.29 +0.0 65,085 - GFF4484 0.29 -1.6 65,322 + GFF4484 0.58 -3.2 65,323 - GFF4484 0.58 +0.0 65,323 - GFF4484 0.58 -1.3 65,323 - GFF4484 0.58 -0.7 65,403 + GFF4484 0.68 -1.8 65,570 + GFF4484 0.88 -0.9 65,570 + GFF4484 0.88 +0.0
Or see this region's nucleotide sequence