Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4474 and GFF4475 are separated by 336 nucleotides GFF4475 and GFF4476 are separated by 181 nucleotides GFF4476 and GFF4477 are separated by 163 nucleotides
GFF4474 - hypothetical protein, at 52,406 to 53,530
GFF4474
GFF4475 - Chemotaxis protein CheY, at 53,867 to 54,274
GFF4475
GFF4476 - hypothetical protein, at 54,456 to 55,154
GFF4476
GFF4477 - hypothetical protein, at 55,318 to 56,157
GFF4477
GFF4478 - hypothetical protein, at 56,105 to 57,544
GFF4478
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 53.710 kb on - strand at 53.859 kb on + strand at 53.955 kb on + strand, within GFF4475 at 53.955 kb on + strand, within GFF4475 at 53.955 kb on + strand, within GFF4475 at 53.955 kb on + strand, within GFF4475 at 53.956 kb on - strand, within GFF4475 at 53.956 kb on - strand, within GFF4475 at 53.956 kb on - strand, within GFF4475 at 54.076 kb on - strand, within GFF4475 at 54.120 kb on + strand, within GFF4475 at 54.121 kb on - strand, within GFF4475 at 54.198 kb on + strand, within GFF4475 at 54.231 kb on + strand, within GFF4475 at 54.232 kb on - strand, within GFF4475 at 54.454 kb on + strand at 54.455 kb on - strand at 55.323 kb on - strand at 55.451 kb on + strand, within GFF4477 at 55.452 kb on - strand, within GFF4477 at 55.452 kb on - strand, within GFF4477 at 55.452 kb on - strand, within GFF4477 at 55.452 kb on - strand, within GFF4477 at 55.452 kb on - strand, within GFF4477 at 55.452 kb on - strand, within GFF4477 at 55.540 kb on + strand, within GFF4477 at 55.540 kb on + strand, within GFF4477 at 55.541 kb on - strand, within GFF4477 at 55.541 kb on - strand, within GFF4477 at 55.541 kb on - strand, within GFF4477 at 55.620 kb on - strand, within GFF4477 at 55.716 kb on + strand, within GFF4477 at 55.716 kb on + strand, within GFF4477 at 55.716 kb on + strand, within GFF4477 at 55.717 kb on - strand, within GFF4477 at 55.734 kb on + strand, within GFF4477 at 55.735 kb on - strand, within GFF4477 at 55.794 kb on - strand, within GFF4477 at 55.794 kb on - strand, within GFF4477 at 55.817 kb on + strand, within GFF4477 at 55.817 kb on + strand, within GFF4477 at 55.817 kb on + strand, within GFF4477 at 55.818 kb on - strand, within GFF4477
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 53,710 - -0.4 53,859 + -0.1 53,955 + GFF4475 0.22 +0.6 53,955 + GFF4475 0.22 -1.0 53,955 + GFF4475 0.22 -0.9 53,955 + GFF4475 0.22 -2.1 53,956 - GFF4475 0.22 -0.8 53,956 - GFF4475 0.22 +0.3 53,956 - GFF4475 0.22 +0.8 54,076 - GFF4475 0.51 -0.8 54,120 + GFF4475 0.62 -0.5 54,121 - GFF4475 0.62 -0.3 54,198 + GFF4475 0.81 +0.7 54,231 + GFF4475 0.89 +0.2 54,232 - GFF4475 0.89 +0.2 54,454 + -0.6 54,455 - +0.4 55,323 - +0.3 55,451 + GFF4477 0.16 +0.0 55,452 - GFF4477 0.16 -0.6 55,452 - GFF4477 0.16 +0.1 55,452 - GFF4477 0.16 -0.0 55,452 - GFF4477 0.16 -1.6 55,452 - GFF4477 0.16 +1.2 55,452 - GFF4477 0.16 -2.6 55,540 + GFF4477 0.26 +0.7 55,540 + GFF4477 0.26 -0.5 55,541 - GFF4477 0.27 -1.1 55,541 - GFF4477 0.27 -0.3 55,541 - GFF4477 0.27 -2.4 55,620 - GFF4477 0.36 -2.3 55,716 + GFF4477 0.47 +0.8 55,716 + GFF4477 0.47 -0.2 55,716 + GFF4477 0.47 -0.4 55,717 - GFF4477 0.47 -0.6 55,734 + GFF4477 0.50 -1.5 55,735 - GFF4477 0.50 -1.4 55,794 - GFF4477 0.57 -1.8 55,794 - GFF4477 0.57 +0.5 55,817 + GFF4477 0.59 -1.8 55,817 + GFF4477 0.59 -1.1 55,817 + GFF4477 0.59 -0.7 55,818 - GFF4477 0.60 -0.7
Or see this region's nucleotide sequence