Strain Fitness in Xanthobacter sp. DMC5 around GFF4470

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4468 and GFF4469 are separated by 214 nucleotidesGFF4469 and GFF4470 overlap by 4 nucleotidesGFF4470 and GFF4471 are separated by 177 nucleotidesGFF4471 and GFF4472 are separated by 150 nucleotides GFF4468 - Vitamin B12 import ATP-binding protein BtuD, at 46,862 to 47,953 GFF4468 GFF4469 - Lipopolysaccharide export system protein LptA, at 48,168 to 48,824 GFF4469 GFF4470 - hypothetical protein, at 48,821 to 49,708 GFF4470 GFF4471 - Ribonuclease D, at 49,886 to 50,506 GFF4471 GFF4472 - hypothetical protein, at 50,657 to 51,319 GFF4472 Position (kb) 48 49 50Strain fitness (log2 ratio) -1 0 1 2at 48.083 kb on + strandat 48.887 kb on - strandat 48.905 kb on - strandat 48.905 kb on - strandat 50.614 kb on - strandat 50.614 kb on - strandat 50.637 kb on - strandat 50.656 kb on + strandat 50.656 kb on + strandat 50.656 kb on + strandat 50.656 kb on + strandat 50.657 kb on - strandat 50.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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48,083 + +0.1
48,887 - -0.6
48,905 - -1.2
48,905 - +0.0
50,614 - -1.2
50,614 - +2.1
50,637 - +0.1
50,656 + +1.6
50,656 + -0.9
50,656 + -1.4
50,656 + -0.7
50,657 - +1.3
50,657 - +0.8

Or see this region's nucleotide sequence