Strain Fitness in Xanthobacter sp. DMC5 around GFF4469

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4468 and GFF4469 are separated by 214 nucleotidesGFF4469 and GFF4470 overlap by 4 nucleotides GFF4468 - Vitamin B12 import ATP-binding protein BtuD, at 46,862 to 47,953 GFF4468 GFF4469 - Lipopolysaccharide export system protein LptA, at 48,168 to 48,824 GFF4469 GFF4470 - hypothetical protein, at 48,821 to 49,708 GFF4470 Position (kb) 48 49Strain fitness (log2 ratio) -1 0 1at 47.623 kb on - strand, within GFF4468at 48.083 kb on + strandat 48.887 kb on - strandat 48.905 kb on - strandat 48.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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47,623 - GFF4468 0.70 +0.3
48,083 + +0.1
48,887 - -0.6
48,905 - -1.2
48,905 - +0.0

Or see this region's nucleotide sequence