Strain Fitness in Xanthobacter sp. DMC5 around GFF4465

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4463 and GFF4464 are separated by 147 nucleotidesGFF4464 and GFF4465 are separated by 21 nucleotidesGFF4465 and GFF4466 are separated by 239 nucleotides GFF4463 - hypothetical protein, at 42,211 to 42,840 GFF4463 GFF4464 - 50S ribosomal protein L27, at 42,988 to 43,260 GFF4464 GFF4465 - 50S ribosomal protein L21, at 43,282 to 43,629 GFF4465 GFF4466 - hypothetical protein, at 43,869 to 45,119 GFF4466 Position (kb) 43 44Strain fitness (log2 ratio) -1 0 1at 42.446 kb on + strand, within GFF4463at 42.447 kb on - strand, within GFF4463at 42.552 kb on - strand, within GFF4463at 42.668 kb on + strand, within GFF4463at 42.668 kb on + strand, within GFF4463at 42.669 kb on - strand, within GFF4463at 42.669 kb on - strand, within GFF4463at 42.747 kb on + strand, within GFF4463at 42.747 kb on + strand, within GFF4463at 42.792 kb on + strandat 42.793 kb on - strandat 42.793 kb on - strandat 44.479 kb on + strand, within GFF4466

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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42,446 + GFF4463 0.37 +0.9
42,447 - GFF4463 0.37 -1.4
42,552 - GFF4463 0.54 -0.5
42,668 + GFF4463 0.73 +1.6
42,668 + GFF4463 0.73 -0.2
42,669 - GFF4463 0.73 +0.7
42,669 - GFF4463 0.73 -0.4
42,747 + GFF4463 0.85 +1.6
42,747 + GFF4463 0.85 -1.2
42,792 + +0.6
42,793 - -0.1
42,793 - +0.8
44,479 + GFF4466 0.49 +0.2

Or see this region's nucleotide sequence