Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4462 and GFF4463 are separated by 106 nucleotides GFF4463 and GFF4464 are separated by 147 nucleotides GFF4464 and GFF4465 are separated by 21 nucleotides GFF4465 and GFF4466 are separated by 239 nucleotides
GFF4462 - RNA pyrophosphohydrolase, at 41,571 to 42,104
GFF4462
GFF4463 - hypothetical protein, at 42,211 to 42,840
GFF4463
GFF4464 - 50S ribosomal protein L27, at 42,988 to 43,260
GFF4464
GFF4465 - 50S ribosomal protein L21, at 43,282 to 43,629
GFF4465
GFF4466 - hypothetical protein, at 43,869 to 45,119
GFF4466
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1 at 42.446 kb on + strand, within GFF4463 at 42.447 kb on - strand, within GFF4463 at 42.552 kb on - strand, within GFF4463 at 42.668 kb on + strand, within GFF4463 at 42.668 kb on + strand, within GFF4463 at 42.669 kb on - strand, within GFF4463 at 42.669 kb on - strand, within GFF4463 at 42.747 kb on + strand, within GFF4463 at 42.747 kb on + strand, within GFF4463 at 42.792 kb on + strand at 42.793 kb on - strand at 42.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 42,446 + GFF4463 0.37 +0.9 42,447 - GFF4463 0.37 -1.4 42,552 - GFF4463 0.54 -0.5 42,668 + GFF4463 0.73 +1.6 42,668 + GFF4463 0.73 -0.2 42,669 - GFF4463 0.73 +0.7 42,669 - GFF4463 0.73 -0.4 42,747 + GFF4463 0.85 +1.6 42,747 + GFF4463 0.85 -1.2 42,792 + +0.6 42,793 - -0.1 42,793 - +0.8
Or see this region's nucleotide sequence