Strain Fitness in Xanthobacter sp. DMC5 around GFF4452

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4451 and GFF4452 are separated by 222 nucleotidesGFF4452 and GFF4453 are separated by 115 nucleotidesGFF4453 and GFF4454 are separated by 31 nucleotides GFF4451 - Sensor histidine kinase RcsC, at 26,319 to 29,822 GFF4451 GFF4452 - hypothetical protein, at 30,045 to 30,251 GFF4452 GFF4453 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 30,367 to 31,167 GFF4453 GFF4454 - protein kinase UbiB, at 31,199 to 32,770 GFF4454 Position (kb) 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1at 29.110 kb on - strand, within GFF4451at 29.110 kb on - strand, within GFF4451at 29.157 kb on - strand, within GFF4451at 29.168 kb on - strand, within GFF4451at 29.175 kb on + strand, within GFF4451at 29.175 kb on + strand, within GFF4451at 29.607 kb on + strandat 29.607 kb on + strandat 29.607 kb on + strandat 29.837 kb on + strandat 29.877 kb on + strandat 30.299 kb on + strandat 30.299 kb on + strandat 30.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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29,110 - GFF4451 0.80 -1.1
29,110 - GFF4451 0.80 -1.7
29,157 - GFF4451 0.81 +0.4
29,168 - GFF4451 0.81 -0.3
29,175 + GFF4451 0.82 -0.4
29,175 + GFF4451 0.82 +1.0
29,607 + +0.2
29,607 + +0.9
29,607 + +1.1
29,837 + +0.0
29,877 + -2.8
30,299 + +1.4
30,299 + +0.1
30,324 + -0.8

Or see this region's nucleotide sequence