Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4446 and GFF4447 are separated by 24 nucleotides GFF4447 and GFF4448 are separated by 628 nucleotides GFF4448 and GFF4449 are separated by 136 nucleotides GFF4449 and GFF4450 are separated by 70 nucleotides
GFF4446 - hypothetical protein, at 23,261 to 23,554
GFF4446
GFF4447 - hypothetical protein, at 23,579 to 23,737
GFF4447
GFF4448 - Organic hydroperoxide resistance protein OhrB, at 24,366 to 24,794
GFF4448
GFF4449 - Organic hydroperoxide resistance transcriptional regulator, at 24,931 to 25,440
GFF4449
GFF4450 - hypothetical protein, at 25,511 to 26,212
GFF4450
Position (kb) 24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.425 kb on - strand, within GFF4446 at 23.425 kb on - strand, within GFF4446 at 23.463 kb on + strand, within GFF4446 at 23.464 kb on - strand, within GFF4446 at 23.464 kb on - strand, within GFF4446 at 23.466 kb on - strand, within GFF4446 at 23.466 kb on - strand, within GFF4446 at 23.499 kb on + strand, within GFF4446 at 23.499 kb on + strand, within GFF4446 at 23.499 kb on + strand, within GFF4446 at 23.500 kb on - strand, within GFF4446 at 23.500 kb on - strand, within GFF4446 at 23.533 kb on - strand at 23.533 kb on - strand at 23.580 kb on + strand at 23.864 kb on + strand at 24.074 kb on + strand at 24.195 kb on - strand at 24.225 kb on + strand at 24.775 kb on + strand at 24.775 kb on + strand at 24.775 kb on + strand at 25.046 kb on - strand, within GFF4449 at 25.046 kb on - strand, within GFF4449 at 25.076 kb on - strand, within GFF4449 at 25.108 kb on + strand, within GFF4449
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 23,425 - GFF4446 0.56 +1.9 23,425 - GFF4446 0.56 +0.4 23,463 + GFF4446 0.69 +1.3 23,464 - GFF4446 0.69 -0.3 23,464 - GFF4446 0.69 -1.7 23,466 - GFF4446 0.70 +0.6 23,466 - GFF4446 0.70 +0.7 23,499 + GFF4446 0.81 -0.1 23,499 + GFF4446 0.81 +0.9 23,499 + GFF4446 0.81 +0.5 23,500 - GFF4446 0.81 +0.3 23,500 - GFF4446 0.81 -0.9 23,533 - +0.4 23,533 - +1.1 23,580 + +0.1 23,864 + +1.2 24,074 + -0.1 24,195 - +0.4 24,225 + -1.2 24,775 + -2.1 24,775 + +0.2 24,775 + +0.9 25,046 - GFF4449 0.23 +1.4 25,046 - GFF4449 0.23 -0.4 25,076 - GFF4449 0.28 +0.0 25,108 + GFF4449 0.35 +0.0
Or see this region's nucleotide sequence