Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4441 and GFF4442 are separated by 411 nucleotides GFF4442 and GFF4443 are separated by 13 nucleotides
GFF4441 - hypothetical protein, at 17,079 to 17,798
GFF4441
GFF4442 - putative Ni/Fe-hydrogenase B-type cytochrome subunit, at 18,210 to 18,965
GFF4442
GFF4443 - Uptake hydrogenase large subunit, at 18,979 to 20,793
GFF4443
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 17.249 kb on - strand, within GFF4441 at 17.398 kb on + strand, within GFF4441 at 17.627 kb on - strand, within GFF4441 at 17.627 kb on - strand, within GFF4441 at 17.638 kb on + strand, within GFF4441 at 17.639 kb on - strand, within GFF4441 at 17.639 kb on - strand, within GFF4441 at 17.689 kb on + strand, within GFF4441 at 17.689 kb on + strand, within GFF4441 at 17.690 kb on - strand, within GFF4441 at 17.690 kb on - strand, within GFF4441 at 17.959 kb on + strand at 17.988 kb on + strand at 18.011 kb on - strand at 18.011 kb on - strand at 18.072 kb on - strand at 18.304 kb on + strand, within GFF4442 at 18.304 kb on + strand, within GFF4442 at 18.305 kb on - strand, within GFF4442 at 18.445 kb on + strand, within GFF4442 at 18.446 kb on - strand, within GFF4442 at 18.507 kb on + strand, within GFF4442 at 18.508 kb on - strand, within GFF4442 at 18.640 kb on + strand, within GFF4442 at 18.640 kb on + strand, within GFF4442 at 18.640 kb on + strand, within GFF4442 at 18.695 kb on + strand, within GFF4442 at 18.696 kb on - strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.698 kb on - strand, within GFF4442 at 18.739 kb on + strand, within GFF4442 at 18.739 kb on + strand, within GFF4442 at 18.859 kb on + strand, within GFF4442 at 18.859 kb on + strand, within GFF4442 at 18.859 kb on + strand, within GFF4442 at 18.860 kb on - strand, within GFF4442 at 18.860 kb on - strand, within GFF4442 at 18.865 kb on + strand, within GFF4442 at 18.865 kb on + strand, within GFF4442 at 18.865 kb on + strand, within GFF4442 at 18.865 kb on + strand, within GFF4442 at 19.141 kb on - strand at 19.196 kb on + strand, within GFF4443 at 19.196 kb on + strand, within GFF4443 at 19.196 kb on + strand, within GFF4443 at 19.197 kb on - strand, within GFF4443 at 19.197 kb on - strand, within GFF4443 at 19.197 kb on - strand, within GFF4443 at 19.197 kb on - strand, within GFF4443 at 19.391 kb on + strand, within GFF4443 at 19.391 kb on + strand, within GFF4443 at 19.518 kb on - strand, within GFF4443 at 19.518 kb on - strand, within GFF4443 at 19.518 kb on - strand, within GFF4443 at 19.536 kb on - strand, within GFF4443 at 19.536 kb on - strand, within GFF4443 at 19.536 kb on - strand, within GFF4443 at 19.611 kb on - strand, within GFF4443 at 19.676 kb on + strand, within GFF4443 at 19.737 kb on - strand, within GFF4443 at 19.742 kb on + strand, within GFF4443 at 19.742 kb on + strand, within GFF4443 at 19.742 kb on + strand, within GFF4443 at 19.743 kb on - strand, within GFF4443 at 19.743 kb on - strand, within GFF4443 at 19.743 kb on - strand, within GFF4443 at 19.855 kb on - strand, within GFF4443 at 19.878 kb on - strand, within GFF4443 at 19.878 kb on - strand, within GFF4443 at 19.886 kb on + strand, within GFF4443 at 19.886 kb on + strand, within GFF4443 at 19.886 kb on + strand, within GFF4443 at 19.887 kb on - strand, within GFF4443 at 19.923 kb on - strand, within GFF4443
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 17,249 - GFF4441 0.24 +0.8 17,398 + GFF4441 0.44 -0.1 17,627 - GFF4441 0.76 +0.3 17,627 - GFF4441 0.76 +0.3 17,638 + GFF4441 0.78 +0.7 17,639 - GFF4441 0.78 -1.9 17,639 - GFF4441 0.78 +1.2 17,689 + GFF4441 0.85 +1.2 17,689 + GFF4441 0.85 +2.0 17,690 - GFF4441 0.85 +0.3 17,690 - GFF4441 0.85 -1.2 17,959 + -0.7 17,988 + +0.8 18,011 - -0.1 18,011 - +0.7 18,072 - -0.7 18,304 + GFF4442 0.12 +0.6 18,304 + GFF4442 0.12 -0.4 18,305 - GFF4442 0.13 +0.2 18,445 + GFF4442 0.31 +1.2 18,446 - GFF4442 0.31 -0.2 18,507 + GFF4442 0.39 +1.9 18,508 - GFF4442 0.39 +0.1 18,640 + GFF4442 0.57 +0.5 18,640 + GFF4442 0.57 -0.4 18,640 + GFF4442 0.57 +0.9 18,695 + GFF4442 0.64 -0.4 18,696 - GFF4442 0.64 +1.0 18,697 + GFF4442 0.64 +2.3 18,697 + GFF4442 0.64 +0.8 18,697 + GFF4442 0.64 +0.3 18,697 + GFF4442 0.64 +0.0 18,698 - GFF4442 0.65 +0.2 18,739 + GFF4442 0.70 -0.4 18,739 + GFF4442 0.70 +0.8 18,859 + GFF4442 0.86 +0.3 18,859 + GFF4442 0.86 +0.0 18,859 + GFF4442 0.86 -1.3 18,860 - GFF4442 0.86 -1.1 18,860 - GFF4442 0.86 -0.1 18,865 + GFF4442 0.87 +0.2 18,865 + GFF4442 0.87 +0.6 18,865 + GFF4442 0.87 +0.1 18,865 + GFF4442 0.87 -1.4 19,141 - +0.7 19,196 + GFF4443 0.12 -0.2 19,196 + GFF4443 0.12 +0.6 19,196 + GFF4443 0.12 -0.4 19,197 - GFF4443 0.12 -1.4 19,197 - GFF4443 0.12 +2.2 19,197 - GFF4443 0.12 +0.6 19,197 - GFF4443 0.12 -0.4 19,391 + GFF4443 0.23 +0.9 19,391 + GFF4443 0.23 +1.2 19,518 - GFF4443 0.30 -1.3 19,518 - GFF4443 0.30 +0.1 19,518 - GFF4443 0.30 +0.3 19,536 - GFF4443 0.31 +1.1 19,536 - GFF4443 0.31 +0.1 19,536 - GFF4443 0.31 +1.0 19,611 - GFF4443 0.35 -1.5 19,676 + GFF4443 0.38 +0.7 19,737 - GFF4443 0.42 -1.2 19,742 + GFF4443 0.42 -0.2 19,742 + GFF4443 0.42 +2.9 19,742 + GFF4443 0.42 -0.2 19,743 - GFF4443 0.42 -1.2 19,743 - GFF4443 0.42 -0.9 19,743 - GFF4443 0.42 -0.2 19,855 - GFF4443 0.48 -0.3 19,878 - GFF4443 0.50 -0.4 19,878 - GFF4443 0.50 -0.7 19,886 + GFF4443 0.50 -0.0 19,886 + GFF4443 0.50 -0.9 19,886 + GFF4443 0.50 +0.1 19,887 - GFF4443 0.50 -0.3 19,923 - GFF4443 0.52 -0.3
Or see this region's nucleotide sequence