Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4438 and GFF4439 are separated by 12 nucleotides GFF4439 and GFF4440 overlap by 1 nucleotides GFF4440 and GFF4441 are separated by 3 nucleotides GFF4441 and GFF4442 are separated by 411 nucleotides
GFF4438 - hypothetical protein, at 15,472 to 16,326
GFF4438
GFF4439 - hypothetical protein, at 16,339 to 16,743
GFF4439
GFF4440 - hypothetical protein, at 16,743 to 17,075
GFF4440
GFF4441 - hypothetical protein, at 17,079 to 17,798
GFF4441
GFF4442 - putative Ni/Fe-hydrogenase B-type cytochrome subunit, at 18,210 to 18,965
GFF4442
Position (kb) 17
18 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.242 kb on - strand at 16.391 kb on + strand, within GFF4439 at 16.391 kb on + strand, within GFF4439 at 16.768 kb on + strand at 17.249 kb on - strand, within GFF4441 at 17.398 kb on + strand, within GFF4441 at 17.627 kb on - strand, within GFF4441 at 17.627 kb on - strand, within GFF4441 at 17.638 kb on + strand, within GFF4441 at 17.639 kb on - strand, within GFF4441 at 17.639 kb on - strand, within GFF4441 at 17.689 kb on + strand, within GFF4441 at 17.689 kb on + strand, within GFF4441 at 17.690 kb on - strand, within GFF4441 at 17.690 kb on - strand, within GFF4441 at 17.959 kb on + strand at 17.988 kb on + strand at 18.011 kb on - strand at 18.011 kb on - strand at 18.072 kb on - strand at 18.304 kb on + strand, within GFF4442 at 18.304 kb on + strand, within GFF4442 at 18.305 kb on - strand, within GFF4442 at 18.445 kb on + strand, within GFF4442 at 18.446 kb on - strand, within GFF4442 at 18.507 kb on + strand, within GFF4442 at 18.508 kb on - strand, within GFF4442 at 18.640 kb on + strand, within GFF4442 at 18.640 kb on + strand, within GFF4442 at 18.640 kb on + strand, within GFF4442 at 18.695 kb on + strand, within GFF4442 at 18.696 kb on - strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.697 kb on + strand, within GFF4442 at 18.698 kb on - strand, within GFF4442 at 18.739 kb on + strand, within GFF4442 at 18.739 kb on + strand, within GFF4442
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 16,242 - -0.2 16,391 + GFF4439 0.13 +1.6 16,391 + GFF4439 0.13 +0.6 16,768 + +0.5 17,249 - GFF4441 0.24 +0.8 17,398 + GFF4441 0.44 -0.1 17,627 - GFF4441 0.76 +0.3 17,627 - GFF4441 0.76 +0.3 17,638 + GFF4441 0.78 +0.7 17,639 - GFF4441 0.78 -1.9 17,639 - GFF4441 0.78 +1.2 17,689 + GFF4441 0.85 +1.2 17,689 + GFF4441 0.85 +2.0 17,690 - GFF4441 0.85 +0.3 17,690 - GFF4441 0.85 -1.2 17,959 + -0.7 17,988 + +0.8 18,011 - -0.1 18,011 - +0.7 18,072 - -0.7 18,304 + GFF4442 0.12 +0.6 18,304 + GFF4442 0.12 -0.4 18,305 - GFF4442 0.13 +0.2 18,445 + GFF4442 0.31 +1.2 18,446 - GFF4442 0.31 -0.2 18,507 + GFF4442 0.39 +1.9 18,508 - GFF4442 0.39 +0.1 18,640 + GFF4442 0.57 +0.5 18,640 + GFF4442 0.57 -0.4 18,640 + GFF4442 0.57 +0.9 18,695 + GFF4442 0.64 -0.4 18,696 - GFF4442 0.64 +1.0 18,697 + GFF4442 0.64 +2.3 18,697 + GFF4442 0.64 +0.8 18,697 + GFF4442 0.64 +0.3 18,697 + GFF4442 0.64 +0.0 18,698 - GFF4442 0.65 +0.2 18,739 + GFF4442 0.70 -0.4 18,739 + GFF4442 0.70 +0.8
Or see this region's nucleotide sequence