Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4436 and GFF4437 overlap by 4 nucleotides GFF4437 and GFF4438 are separated by 8 nucleotides GFF4438 and GFF4439 are separated by 12 nucleotides GFF4439 and GFF4440 overlap by 1 nucleotides GFF4440 and GFF4441 are separated by 3 nucleotides
GFF4436 - hypothetical protein, at 13,596 to 14,570
GFF4436
GFF4437 - hypothetical protein, at 14,567 to 15,463
GFF4437
GFF4438 - hypothetical protein, at 15,472 to 16,326
GFF4438
GFF4439 - hypothetical protein, at 16,339 to 16,743
GFF4439
GFF4440 - hypothetical protein, at 16,743 to 17,075
GFF4440
GFF4441 - hypothetical protein, at 17,079 to 17,798
GFF4441
Position (kb) 15
16
17 Strain fitness (log2 ratio) -1
0
1 at 14.889 kb on + strand, within GFF4437 at 14.889 kb on + strand, within GFF4437 at 14.889 kb on + strand, within GFF4437 at 14.890 kb on - strand, within GFF4437 at 14.890 kb on - strand, within GFF4437 at 14.890 kb on - strand, within GFF4437 at 14.890 kb on - strand, within GFF4437 at 14.890 kb on - strand, within GFF4437 at 14.929 kb on - strand, within GFF4437 at 14.929 kb on - strand, within GFF4437 at 15.094 kb on + strand, within GFF4437 at 15.095 kb on - strand, within GFF4437 at 15.366 kb on + strand, within GFF4437 at 15.366 kb on + strand, within GFF4437 at 15.432 kb on + strand at 15.433 kb on - strand at 15.433 kb on - strand at 15.602 kb on + strand, within GFF4438 at 15.603 kb on - strand, within GFF4438 at 16.242 kb on - strand at 16.391 kb on + strand, within GFF4439 at 16.391 kb on + strand, within GFF4439 at 16.768 kb on + strand at 17.249 kb on - strand, within GFF4441
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 14,889 + GFF4437 0.36 -0.4 14,889 + GFF4437 0.36 -0.7 14,889 + GFF4437 0.36 -0.8 14,890 - GFF4437 0.36 +0.1 14,890 - GFF4437 0.36 -0.7 14,890 - GFF4437 0.36 +0.1 14,890 - GFF4437 0.36 +1.3 14,890 - GFF4437 0.36 -0.5 14,929 - GFF4437 0.40 +0.7 14,929 - GFF4437 0.40 +0.6 15,094 + GFF4437 0.59 -0.8 15,095 - GFF4437 0.59 -0.2 15,366 + GFF4437 0.89 +0.5 15,366 + GFF4437 0.89 -0.7 15,432 + +1.5 15,433 - -0.8 15,433 - -1.4 15,602 + GFF4438 0.15 +0.0 15,603 - GFF4438 0.15 +0.0 16,242 - -0.2 16,391 + GFF4439 0.13 +1.6 16,391 + GFF4439 0.13 +0.6 16,768 + +0.5 17,249 - GFF4441 0.24 +0.8
Or see this region's nucleotide sequence