Strain Fitness in Xanthobacter sp. DMC5 around GFF4425

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4423 and GFF4424 are separated by 142 nucleotidesGFF4424 and GFF4425 are separated by 270 nucleotidesGFF4425 and GFF4426 are separated by 60 nucleotides GFF4423 - Tryptophan-rich protein TspO, at 1,958 to 2,464 GFF4423 GFF4424 - hypothetical protein, at 2,607 to 3,053 GFF4424 GFF4425 - hypothetical protein, at 3,324 to 3,623 GFF4425 GFF4426 - Protein YhgF, at 3,684 to 6,053 GFF4426 Position (kb) 3 4Strain fitness (log2 ratio) -1 0 1at 3.073 kb on + strandat 3.074 kb on - strandat 3.317 kb on + strandat 3.686 kb on - strandat 4.310 kb on - strand, within GFF4426

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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3,073 + +0.4
3,074 - -0.3
3,317 + +0.6
3,686 - +0.3
4,310 - GFF4426 0.26 +1.0

Or see this region's nucleotide sequence