Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4421 and GFF4422 are separated by 5 nucleotides GFF4422 and GFF4423 are separated by 19 nucleotides GFF4423 and GFF4424 are separated by 142 nucleotides GFF4424 and GFF4425 are separated by 270 nucleotides GFF4425 and GFF4426 are separated by 60 nucleotides
GFF4421 - Corrinoid adenosyltransferase, at 1,142 to 1,738
GFF4421
GFF4422 - hypothetical protein, at 1,744 to 1,938
GFF4422
GFF4423 - Tryptophan-rich protein TspO, at 1,958 to 2,464
GFF4423
GFF4424 - hypothetical protein, at 2,607 to 3,053
GFF4424
GFF4425 - hypothetical protein, at 3,324 to 3,623
GFF4425
GFF4426 - Protein YhgF, at 3,684 to 6,053
GFF4426
Position (kb) 2
3
4 Strain fitness (log2 ratio) -1
0
1 at 1.635 kb on + strand, within GFF4421 at 1.636 kb on - strand, within GFF4421 at 1.636 kb on - strand, within GFF4421 at 1.717 kb on - strand at 1.717 kb on - strand at 1.998 kb on + strand at 1.998 kb on + strand at 1.999 kb on - strand at 2.017 kb on - strand, within GFF4423 at 2.263 kb on - strand, within GFF4423 at 3.073 kb on + strand at 3.074 kb on - strand at 3.317 kb on + strand at 3.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 1,635 + GFF4421 0.83 +0.6 1,636 - GFF4421 0.83 +1.3 1,636 - GFF4421 0.83 +1.0 1,717 - +0.6 1,717 - -0.6 1,998 + -0.9 1,998 + -0.7 1,999 - +0.9 2,017 - GFF4423 0.12 +0.8 2,263 - GFF4423 0.60 +0.6 3,073 + +0.4 3,074 - -0.3 3,317 + +0.6 3,686 - +0.3
Or see this region's nucleotide sequence