Strain Fitness in Xanthobacter sp. DMC5 around GFF442

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF440 and GFF441 are separated by 299 nucleotidesGFF441 and GFF442 are separated by 41 nucleotidesGFF442 and GFF443 are separated by 92 nucleotidesGFF443 and GFF444 overlap by 4 nucleotides GFF440 - hypothetical protein, at 463,761 to 464,120 GFF440 GFF441 - hypothetical protein, at 464,420 to 464,794 GFF441 GFF442 - hypothetical protein, at 464,836 to 466,338 GFF442 GFF443 - Ethanolamine ammonia-lyase light chain, at 466,431 to 467,207 GFF443 GFF444 - Ethanolamine ammonia-lyase heavy chain, at 467,204 to 468,592 GFF444 Position (kb) 464 465 466 467Strain fitness (log2 ratio) -2 -1 0 1 2at 464.183 kb on + strandat 464.507 kb on + strand, within GFF441at 464.507 kb on + strand, within GFF441at 464.663 kb on + strand, within GFF441at 464.664 kb on - strand, within GFF441at 464.735 kb on + strand, within GFF441at 464.736 kb on - strand, within GFF441at 464.736 kb on - strand, within GFF441at 464.849 kb on + strandat 464.850 kb on - strandat 464.927 kb on + strandat 464.928 kb on - strandat 464.978 kb on + strandat 464.979 kb on - strandat 465.063 kb on + strand, within GFF442at 465.064 kb on - strand, within GFF442at 465.065 kb on + strand, within GFF442at 465.065 kb on + strand, within GFF442at 465.128 kb on + strand, within GFF442at 465.314 kb on + strand, within GFF442at 465.335 kb on + strand, within GFF442at 465.335 kb on + strand, within GFF442at 465.336 kb on - strand, within GFF442at 465.336 kb on - strand, within GFF442at 465.356 kb on + strand, within GFF442at 465.356 kb on + strand, within GFF442at 465.431 kb on + strand, within GFF442at 465.431 kb on + strand, within GFF442at 465.432 kb on - strand, within GFF442at 465.432 kb on - strand, within GFF442at 465.432 kb on - strand, within GFF442at 465.432 kb on - strand, within GFF442at 465.432 kb on - strand, within GFF442at 465.573 kb on + strand, within GFF442at 465.574 kb on - strand, within GFF442at 465.574 kb on - strand, within GFF442at 465.891 kb on - strand, within GFF442at 465.950 kb on + strand, within GFF442at 465.950 kb on + strand, within GFF442at 465.950 kb on + strand, within GFF442at 465.951 kb on - strand, within GFF442at 465.951 kb on - strand, within GFF442at 465.951 kb on - strand, within GFF442at 465.951 kb on - strand, within GFF442at 465.992 kb on + strand, within GFF442at 465.992 kb on + strand, within GFF442at 465.992 kb on + strand, within GFF442at 465.993 kb on - strand, within GFF442at 465.993 kb on - strand, within GFF442at 465.993 kb on - strand, within GFF442at 466.124 kb on + strand, within GFF442at 466.124 kb on + strand, within GFF442at 466.124 kb on + strand, within GFF442at 466.124 kb on + strand, within GFF442at 466.124 kb on + strand, within GFF442at 466.125 kb on - strand, within GFF442at 466.286 kb on + strandat 466.287 kb on - strandat 466.307 kb on + strandat 466.307 kb on + strandat 466.307 kb on + strandat 466.308 kb on - strandat 466.308 kb on - strandat 466.308 kb on - strandat 466.311 kb on + strandat 466.364 kb on + strandat 466.364 kb on + strandat 466.365 kb on - strandat 466.365 kb on - strandat 466.365 kb on - strandat 466.592 kb on + strand, within GFF443at 466.639 kb on + strand, within GFF443at 466.640 kb on - strand, within GFF443at 466.640 kb on - strand, within GFF443at 466.640 kb on - strand, within GFF443at 466.640 kb on - strand, within GFF443at 466.640 kb on - strand, within GFF443at 466.648 kb on + strand, within GFF443at 466.648 kb on + strand, within GFF443at 466.648 kb on + strand, within GFF443at 466.649 kb on - strand, within GFF443at 466.972 kb on + strand, within GFF443at 466.972 kb on + strand, within GFF443at 466.973 kb on - strand, within GFF443at 466.973 kb on - strand, within GFF443at 467.066 kb on + strand, within GFF443at 467.067 kb on - strand, within GFF443at 467.226 kb on + strandat 467.226 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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464,183 + +0.4
464,507 + GFF441 0.23 +0.9
464,507 + GFF441 0.23 +1.9
464,663 + GFF441 0.65 -0.1
464,664 - GFF441 0.65 -0.1
464,735 + GFF441 0.84 -0.2
464,736 - GFF441 0.84 +0.3
464,736 - GFF441 0.84 -0.4
464,849 + +0.4
464,850 - -1.0
464,927 + +1.2
464,928 - -0.1
464,978 + +0.2
464,979 - -0.3
465,063 + GFF442 0.15 -0.2
465,064 - GFF442 0.15 -0.3
465,065 + GFF442 0.15 +1.1
465,065 + GFF442 0.15 -0.7
465,128 + GFF442 0.19 +0.4
465,314 + GFF442 0.32 +1.4
465,335 + GFF442 0.33 -1.5
465,335 + GFF442 0.33 +0.5
465,336 - GFF442 0.33 -0.5
465,336 - GFF442 0.33 -0.0
465,356 + GFF442 0.35 +0.1
465,356 + GFF442 0.35 +0.2
465,431 + GFF442 0.40 +0.5
465,431 + GFF442 0.40 -1.2
465,432 - GFF442 0.40 +0.9
465,432 - GFF442 0.40 -0.8
465,432 - GFF442 0.40 +0.3
465,432 - GFF442 0.40 -0.6
465,432 - GFF442 0.40 -1.6
465,573 + GFF442 0.49 +0.6
465,574 - GFF442 0.49 +0.6
465,574 - GFF442 0.49 +0.9
465,891 - GFF442 0.70 +0.8
465,950 + GFF442 0.74 -0.8
465,950 + GFF442 0.74 -0.7
465,950 + GFF442 0.74 +0.4
465,951 - GFF442 0.74 +0.7
465,951 - GFF442 0.74 +0.4
465,951 - GFF442 0.74 -0.9
465,951 - GFF442 0.74 +0.0
465,992 + GFF442 0.77 +0.3
465,992 + GFF442 0.77 -2.3
465,992 + GFF442 0.77 +1.0
465,993 - GFF442 0.77 +0.8
465,993 - GFF442 0.77 -1.4
465,993 - GFF442 0.77 -0.2
466,124 + GFF442 0.86 -0.7
466,124 + GFF442 0.86 -0.1
466,124 + GFF442 0.86 -0.1
466,124 + GFF442 0.86 +1.2
466,124 + GFF442 0.86 +0.1
466,125 - GFF442 0.86 -0.8
466,286 + +0.5
466,287 - -0.4
466,307 + -1.1
466,307 + -0.6
466,307 + -0.2
466,308 - +0.4
466,308 - +0.4
466,308 - +0.0
466,311 + -0.6
466,364 + +0.2
466,364 + -0.1
466,365 - -0.1
466,365 - +1.6
466,365 - +0.4
466,592 + GFF443 0.21 -0.0
466,639 + GFF443 0.27 -0.4
466,640 - GFF443 0.27 +1.3
466,640 - GFF443 0.27 -0.2
466,640 - GFF443 0.27 +0.2
466,640 - GFF443 0.27 -1.7
466,640 - GFF443 0.27 +0.2
466,648 + GFF443 0.28 -0.9
466,648 + GFF443 0.28 -0.1
466,648 + GFF443 0.28 +0.2
466,649 - GFF443 0.28 -1.5
466,972 + GFF443 0.70 -1.8
466,972 + GFF443 0.70 +0.3
466,973 - GFF443 0.70 +0.7
466,973 - GFF443 0.70 +0.3
467,066 + GFF443 0.82 -0.4
467,067 - GFF443 0.82 -0.3
467,226 + -2.5
467,226 + -0.4

Or see this region's nucleotide sequence