Strain Fitness in Xanthobacter sp. DMC5 around GFF4408

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4406 and GFF4407 are separated by 27 nucleotidesGFF4407 and GFF4408 are separated by 48 nucleotidesGFF4408 and GFF4409 are separated by 381 nucleotides GFF4406 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 210,652 to 211,878 GFF4406 GFF4407 - hypothetical protein, at 211,906 to 212,232 GFF4407 GFF4408 - 2-oxoglutarate dehydrogenase E1 component, at 212,281 to 215,235 GFF4408 GFF4409 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 215,617 to 216,501 GFF4409 Position (kb) 212 213 214 215 216Strain fitness (log2 ratio) -1 0 1at 212.269 kb on - strandat 215.410 kb on - strandat 215.410 kb on - strandat 215.412 kb on - strandat 215.412 kb on - strandat 216.027 kb on - strand, within GFF4409

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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212,269 - +1.1
215,410 - -0.6
215,410 - -0.1
215,412 - -1.2
215,412 - -0.7
216,027 - GFF4409 0.46 -0.6

Or see this region's nucleotide sequence