Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4390 and GFF4391 overlap by 4 nucleotides GFF4391 and GFF4392 are separated by 178 nucleotides GFF4392 and GFF4393 overlap by 4 nucleotides
GFF4390 - Histidinol-phosphate aminotransferase, at 190,213 to 191,355
GFF4390
GFF4391 - Cyclohexadienyl dehydrogenase, at 191,352 to 192,293
GFF4391
GFF4392 - hypothetical protein, at 192,472 to 193,107
GFF4392
GFF4393 - hypothetical protein, at 193,104 to 194,144
GFF4393
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 192.371 kb on + strand at 192.371 kb on + strand at 192.394 kb on - strand at 192.394 kb on - strand at 192.463 kb on + strand at 192.464 kb on - strand at 192.581 kb on - strand, within GFF4392 at 192.686 kb on - strand, within GFF4392 at 192.686 kb on - strand, within GFF4392 at 192.742 kb on + strand, within GFF4392 at 192.749 kb on - strand, within GFF4392 at 192.749 kb on - strand, within GFF4392 at 192.808 kb on + strand, within GFF4392 at 192.809 kb on - strand, within GFF4392 at 192.818 kb on - strand, within GFF4392 at 192.902 kb on - strand, within GFF4392 at 192.902 kb on - strand, within GFF4392 at 193.063 kb on + strand at 193.063 kb on + strand at 193.063 kb on + strand at 193.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 192,371 + +1.4 192,371 + -1.5 192,394 - +0.5 192,394 - -1.3 192,463 + +1.9 192,464 - +1.0 192,581 - GFF4392 0.17 +1.3 192,686 - GFF4392 0.34 +1.4 192,686 - GFF4392 0.34 +0.8 192,742 + GFF4392 0.42 +0.7 192,749 - GFF4392 0.44 +0.3 192,749 - GFF4392 0.44 +0.7 192,808 + GFF4392 0.53 +0.8 192,809 - GFF4392 0.53 -1.8 192,818 - GFF4392 0.54 +1.0 192,902 - GFF4392 0.68 +1.1 192,902 - GFF4392 0.68 -0.2 193,063 + +0.4 193,063 + +1.5 193,063 + -0.4 193,064 - +0.4
Or see this region's nucleotide sequence