Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4377 and GFF4378 are separated by 21 nucleotides GFF4378 and GFF4379 are separated by 147 nucleotides GFF4379 and GFF4380 are separated by 20 nucleotides GFF4380 and GFF4381 overlap by 4 nucleotides
GFF4377 - Anthranilate 3-monooxygenase oxygenase component, at 166,799 to 168,283
GFF4377
GFF4378 - p-hydroxyphenylacetate 3-hydroxylase, reductase component, at 168,305 to 168,817
GFF4378
GFF4379 - hypothetical protein, at 168,965 to 169,555
GFF4379
GFF4380 - Lipoprotein-releasing system ATP-binding protein LolD, at 169,576 to 170,343
GFF4380
GFF4381 - putative ABC transporter permease, at 170,340 to 171,485
GFF4381
Position (kb) 168
169
170 Strain fitness (log2 ratio) -1
0
1
2 at 168.054 kb on + strand, within GFF4377 at 168.055 kb on - strand, within GFF4377 at 168.055 kb on - strand, within GFF4377 at 168.055 kb on - strand, within GFF4377 at 168.259 kb on + strand at 168.259 kb on + strand at 168.260 kb on - strand at 168.260 kb on - strand at 168.260 kb on - strand at 168.301 kb on - strand at 168.334 kb on - strand at 168.334 kb on - strand at 169.033 kb on + strand, within GFF4379 at 169.496 kb on + strand, within GFF4379 at 169.497 kb on - strand at 169.577 kb on + strand at 169.577 kb on + strand at 169.577 kb on + strand at 169.859 kb on + strand, within GFF4380 at 169.859 kb on + strand, within GFF4380 at 169.860 kb on - strand, within GFF4380 at 169.860 kb on - strand, within GFF4380 at 170.017 kb on + strand, within GFF4380 at 170.017 kb on + strand, within GFF4380 at 170.017 kb on + strand, within GFF4380 at 170.018 kb on - strand, within GFF4380 at 170.018 kb on - strand, within GFF4380 at 170.018 kb on - strand, within GFF4380 at 170.018 kb on - strand, within GFF4380 at 170.246 kb on + strand, within GFF4380 at 170.246 kb on + strand, within GFF4380 at 170.247 kb on - strand, within GFF4380 at 170.247 kb on - strand, within GFF4380 at 170.247 kb on - strand, within GFF4380 at 170.247 kb on - strand, within GFF4380 at 170.482 kb on + strand, within GFF4381 at 170.483 kb on - strand, within GFF4381 at 170.516 kb on - strand, within GFF4381 at 170.516 kb on - strand, within GFF4381
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 168,054 + GFF4377 0.85 -0.3 168,055 - GFF4377 0.85 -0.8 168,055 - GFF4377 0.85 -0.5 168,055 - GFF4377 0.85 +2.1 168,259 + +0.3 168,259 + +0.8 168,260 - -0.1 168,260 - -0.3 168,260 - +0.7 168,301 - -0.5 168,334 - -0.2 168,334 - +0.6 169,033 + GFF4379 0.12 -0.4 169,496 + GFF4379 0.90 -0.4 169,497 - -1.1 169,577 + -1.0 169,577 + -0.7 169,577 + +1.1 169,859 + GFF4380 0.37 -0.7 169,859 + GFF4380 0.37 +0.6 169,860 - GFF4380 0.37 +0.8 169,860 - GFF4380 0.37 -0.0 170,017 + GFF4380 0.57 +1.6 170,017 + GFF4380 0.57 +0.1 170,017 + GFF4380 0.57 +0.9 170,018 - GFF4380 0.58 +0.7 170,018 - GFF4380 0.58 +0.0 170,018 - GFF4380 0.58 +0.4 170,018 - GFF4380 0.58 +1.0 170,246 + GFF4380 0.87 +1.7 170,246 + GFF4380 0.87 +1.5 170,247 - GFF4380 0.87 +1.3 170,247 - GFF4380 0.87 +0.5 170,247 - GFF4380 0.87 -0.7 170,247 - GFF4380 0.87 +1.1 170,482 + GFF4381 0.12 -0.5 170,483 - GFF4381 0.12 +0.6 170,516 - GFF4381 0.15 +0.3 170,516 - GFF4381 0.15 -0.4
Or see this region's nucleotide sequence