Strain Fitness in Xanthobacter sp. DMC5 around GFF4378

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4377 and GFF4378 are separated by 21 nucleotidesGFF4378 and GFF4379 are separated by 147 nucleotidesGFF4379 and GFF4380 are separated by 20 nucleotides GFF4377 - Anthranilate 3-monooxygenase oxygenase component, at 166,799 to 168,283 GFF4377 GFF4378 - p-hydroxyphenylacetate 3-hydroxylase, reductase component, at 168,305 to 168,817 GFF4378 GFF4379 - hypothetical protein, at 168,965 to 169,555 GFF4379 GFF4380 - Lipoprotein-releasing system ATP-binding protein LolD, at 169,576 to 170,343 GFF4380 Position (kb) 168 169Strain fitness (log2 ratio) -2 -1 0 1 2at 167.409 kb on + strand, within GFF4377at 167.409 kb on + strand, within GFF4377at 167.409 kb on + strand, within GFF4377at 167.410 kb on - strand, within GFF4377at 167.418 kb on + strand, within GFF4377at 167.419 kb on - strand, within GFF4377at 167.480 kb on + strand, within GFF4377at 167.480 kb on + strand, within GFF4377at 167.480 kb on + strand, within GFF4377at 167.481 kb on - strand, within GFF4377at 167.514 kb on + strand, within GFF4377at 167.515 kb on - strand, within GFF4377at 167.586 kb on + strand, within GFF4377at 167.586 kb on + strand, within GFF4377at 167.586 kb on + strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.587 kb on - strand, within GFF4377at 167.847 kb on + strand, within GFF4377at 167.848 kb on - strand, within GFF4377at 167.848 kb on - strand, within GFF4377at 167.848 kb on - strand, within GFF4377at 167.848 kb on - strand, within GFF4377at 167.856 kb on + strand, within GFF4377at 167.857 kb on - strand, within GFF4377at 167.883 kb on + strand, within GFF4377at 167.886 kb on + strand, within GFF4377at 167.886 kb on + strand, within GFF4377at 167.887 kb on - strand, within GFF4377at 167.944 kb on + strand, within GFF4377at 167.944 kb on + strand, within GFF4377at 167.944 kb on + strand, within GFF4377at 167.944 kb on + strand, within GFF4377at 167.945 kb on - strand, within GFF4377at 167.945 kb on - strand, within GFF4377at 167.945 kb on - strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.946 kb on + strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 167.947 kb on - strand, within GFF4377at 168.054 kb on + strand, within GFF4377at 168.055 kb on - strand, within GFF4377at 168.055 kb on - strand, within GFF4377at 168.055 kb on - strand, within GFF4377at 168.259 kb on + strandat 168.259 kb on + strandat 168.260 kb on - strandat 168.260 kb on - strandat 168.260 kb on - strandat 168.301 kb on - strandat 168.334 kb on - strandat 168.334 kb on - strandat 169.033 kb on + strand, within GFF4379at 169.496 kb on + strand, within GFF4379at 169.497 kb on - strandat 169.577 kb on + strandat 169.577 kb on + strandat 169.577 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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167,409 + GFF4377 0.41 -0.3
167,409 + GFF4377 0.41 -1.7
167,409 + GFF4377 0.41 -0.7
167,410 - GFF4377 0.41 +0.8
167,418 + GFF4377 0.42 +1.0
167,419 - GFF4377 0.42 +0.5
167,480 + GFF4377 0.46 -0.5
167,480 + GFF4377 0.46 -1.0
167,480 + GFF4377 0.46 -0.0
167,481 - GFF4377 0.46 +0.3
167,514 + GFF4377 0.48 +0.1
167,515 - GFF4377 0.48 +0.0
167,586 + GFF4377 0.53 -0.6
167,586 + GFF4377 0.53 +0.4
167,586 + GFF4377 0.53 -0.6
167,587 - GFF4377 0.53 -0.6
167,587 - GFF4377 0.53 -0.8
167,587 - GFF4377 0.53 +0.7
167,587 - GFF4377 0.53 -0.9
167,847 + GFF4377 0.71 +0.0
167,848 - GFF4377 0.71 +0.8
167,848 - GFF4377 0.71 -0.6
167,848 - GFF4377 0.71 -0.2
167,848 - GFF4377 0.71 +1.0
167,856 + GFF4377 0.71 +1.2
167,857 - GFF4377 0.71 +1.2
167,883 + GFF4377 0.73 -0.8
167,886 + GFF4377 0.73 +0.4
167,886 + GFF4377 0.73 -0.0
167,887 - GFF4377 0.73 -1.3
167,944 + GFF4377 0.77 -0.4
167,944 + GFF4377 0.77 +0.3
167,944 + GFF4377 0.77 +0.7
167,944 + GFF4377 0.77 +0.6
167,945 - GFF4377 0.77 -0.5
167,945 - GFF4377 0.77 -0.4
167,945 - GFF4377 0.77 +0.7
167,946 + GFF4377 0.77 -0.2
167,946 + GFF4377 0.77 +0.7
167,946 + GFF4377 0.77 +0.9
167,946 + GFF4377 0.77 +0.6
167,946 + GFF4377 0.77 +0.1
167,946 + GFF4377 0.77 -0.7
167,946 + GFF4377 0.77 -1.8
167,946 + GFF4377 0.77 +0.0
167,946 + GFF4377 0.77 +0.5
167,946 + GFF4377 0.77 +2.1
167,947 - GFF4377 0.77 +0.1
167,947 - GFF4377 0.77 -1.1
167,947 - GFF4377 0.77 +1.3
167,947 - GFF4377 0.77 +0.3
167,947 - GFF4377 0.77 +0.7
167,947 - GFF4377 0.77 -1.3
167,947 - GFF4377 0.77 +0.7
167,947 - GFF4377 0.77 -0.0
167,947 - GFF4377 0.77 -0.3
168,054 + GFF4377 0.85 -0.3
168,055 - GFF4377 0.85 -0.8
168,055 - GFF4377 0.85 -0.5
168,055 - GFF4377 0.85 +2.1
168,259 + +0.3
168,259 + +0.8
168,260 - -0.1
168,260 - -0.3
168,260 - +0.7
168,301 - -0.5
168,334 - -0.2
168,334 - +0.6
169,033 + GFF4379 0.12 -0.4
169,496 + GFF4379 0.90 -0.4
169,497 - -1.1
169,577 + -1.0
169,577 + -0.7
169,577 + +1.1

Or see this region's nucleotide sequence