Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4372 and GFF4373 are separated by 188 nucleotides GFF4373 and GFF4374 overlap by 17 nucleotides GFF4374 and GFF4375 are separated by 9 nucleotides
GFF4372 - hypothetical protein, at 162,402 to 162,728
GFF4372
GFF4373 - Transcriptional regulatory protein OmpR, at 162,917 to 163,633
GFF4373
GFF4374 - Adaptive-response sensory-kinase SasA, at 163,617 to 165,011
GFF4374
GFF4375 - 2-amino-5-chloromuconic acid deaminase, at 165,021 to 166,367
GFF4375
Position (kb) 163
164
165
166 Strain fitness (log2 ratio) -2
-1
0
1 at 162.830 kb on - strand at 162.998 kb on + strand, within GFF4373 at 162.999 kb on - strand, within GFF4373 at 162.999 kb on - strand, within GFF4373 at 162.999 kb on - strand, within GFF4373 at 163.602 kb on - strand at 163.883 kb on - strand, within GFF4374 at 164.094 kb on + strand, within GFF4374 at 164.094 kb on + strand, within GFF4374 at 164.105 kb on - strand, within GFF4374 at 164.310 kb on - strand, within GFF4374 at 164.413 kb on - strand, within GFF4374 at 164.413 kb on - strand, within GFF4374 at 164.413 kb on - strand, within GFF4374 at 164.718 kb on + strand, within GFF4374 at 164.719 kb on - strand, within GFF4374 at 164.719 kb on - strand, within GFF4374 at 165.209 kb on - strand, within GFF4375 at 165.346 kb on + strand, within GFF4375 at 165.346 kb on + strand, within GFF4375 at 165.445 kb on + strand, within GFF4375 at 165.445 kb on + strand, within GFF4375 at 165.446 kb on - strand, within GFF4375 at 165.795 kb on + strand, within GFF4375 at 165.796 kb on - strand, within GFF4375 at 165.796 kb on - strand, within GFF4375
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 162,830 - +0.7 162,998 + GFF4373 0.11 -1.2 162,999 - GFF4373 0.11 -0.1 162,999 - GFF4373 0.11 +0.2 162,999 - GFF4373 0.11 +1.4 163,602 - -0.6 163,883 - GFF4374 0.19 -0.9 164,094 + GFF4374 0.34 -0.5 164,094 + GFF4374 0.34 -1.0 164,105 - GFF4374 0.35 +1.2 164,310 - GFF4374 0.50 +0.4 164,413 - GFF4374 0.57 -0.2 164,413 - GFF4374 0.57 -0.4 164,413 - GFF4374 0.57 -2.5 164,718 + GFF4374 0.79 -1.1 164,719 - GFF4374 0.79 +0.4 164,719 - GFF4374 0.79 -1.1 165,209 - GFF4375 0.14 -0.5 165,346 + GFF4375 0.24 -0.1 165,346 + GFF4375 0.24 +0.8 165,445 + GFF4375 0.31 +0.2 165,445 + GFF4375 0.31 +0.0 165,446 - GFF4375 0.32 +0.1 165,795 + GFF4375 0.57 -0.2 165,796 - GFF4375 0.58 -1.7 165,796 - GFF4375 0.58 -0.3
Or see this region's nucleotide sequence