Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF434 and GFF435 overlap by 4 nucleotides GFF435 and GFF436 overlap by 4 nucleotides GFF436 and GFF437 overlap by 26 nucleotides GFF437 and GFF438 are separated by 10 nucleotides
GFF434 - Phytoene desaturase (lycopene-forming), at 457,139 to 458,656
GFF434
GFF435 - 15-cis-phytoene synthase, at 458,653 to 459,594
GFF435
GFF436 - Zeaxanthin glucosyltransferase, at 459,591 to 460,856
GFF436
GFF437 - Acetyltransferase, at 460,831 to 461,385
GFF437
GFF438 - D-alanine aminotransferase, at 461,396 to 462,187
GFF438
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.782 kb on + strand, within GFF435 at 458.782 kb on + strand, within GFF435 at 458.783 kb on - strand, within GFF435 at 459.034 kb on + strand, within GFF435 at 459.062 kb on - strand, within GFF435 at 459.067 kb on + strand, within GFF435 at 459.068 kb on - strand, within GFF435 at 459.068 kb on - strand, within GFF435 at 459.068 kb on - strand, within GFF435 at 459.220 kb on + strand, within GFF435 at 459.220 kb on + strand, within GFF435 at 459.220 kb on + strand, within GFF435 at 459.220 kb on + strand, within GFF435 at 459.221 kb on - strand, within GFF435 at 459.221 kb on - strand, within GFF435 at 459.221 kb on - strand, within GFF435 at 459.221 kb on - strand, within GFF435 at 459.254 kb on + strand, within GFF435 at 459.338 kb on - strand, within GFF435 at 459.633 kb on + strand at 459.633 kb on + strand at 459.634 kb on - strand at 459.634 kb on - strand at 459.634 kb on - strand at 459.789 kb on + strand, within GFF436 at 459.789 kb on + strand, within GFF436 at 459.789 kb on + strand, within GFF436 at 459.790 kb on - strand, within GFF436 at 459.790 kb on - strand, within GFF436 at 460.050 kb on + strand, within GFF436 at 460.264 kb on - strand, within GFF436 at 460.654 kb on - strand, within GFF436 at 460.744 kb on - strand at 460.763 kb on + strand at 460.863 kb on - strand at 461.060 kb on + strand, within GFF437 at 461.075 kb on + strand, within GFF437 at 461.075 kb on + strand, within GFF437 at 461.076 kb on - strand, within GFF437 at 461.130 kb on - strand, within GFF437 at 461.130 kb on - strand, within GFF437 at 461.438 kb on + strand at 461.439 kb on - strand at 461.439 kb on - strand at 461.620 kb on + strand, within GFF438 at 461.621 kb on - strand, within GFF438 at 461.621 kb on - strand, within GFF438 at 461.621 kb on - strand, within GFF438 at 461.625 kb on - strand, within GFF438 at 461.625 kb on - strand, within GFF438 at 461.633 kb on + strand, within GFF438 at 461.633 kb on + strand, within GFF438 at 461.751 kb on + strand, within GFF438 at 461.752 kb on - strand, within GFF438
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 458,782 + GFF435 0.14 +0.3 458,782 + GFF435 0.14 -0.6 458,783 - GFF435 0.14 -0.8 459,034 + GFF435 0.40 -0.5 459,062 - GFF435 0.43 -1.7 459,067 + GFF435 0.44 +1.9 459,068 - GFF435 0.44 +1.2 459,068 - GFF435 0.44 -1.3 459,068 - GFF435 0.44 -0.2 459,220 + GFF435 0.60 -0.7 459,220 + GFF435 0.60 -0.1 459,220 + GFF435 0.60 -0.7 459,220 + GFF435 0.60 +2.2 459,221 - GFF435 0.60 +1.2 459,221 - GFF435 0.60 +0.8 459,221 - GFF435 0.60 -1.1 459,221 - GFF435 0.60 +0.0 459,254 + GFF435 0.64 -1.8 459,338 - GFF435 0.73 +0.5 459,633 + +1.4 459,633 + -1.4 459,634 - -1.1 459,634 - -0.3 459,634 - -0.9 459,789 + GFF436 0.16 -0.6 459,789 + GFF436 0.16 +0.4 459,789 + GFF436 0.16 -1.4 459,790 - GFF436 0.16 +0.3 459,790 - GFF436 0.16 +0.4 460,050 + GFF436 0.36 +0.1 460,264 - GFF436 0.53 +0.3 460,654 - GFF436 0.84 -0.8 460,744 - +0.3 460,763 + +0.6 460,863 - -0.0 461,060 + GFF437 0.41 -0.5 461,075 + GFF437 0.44 +0.6 461,075 + GFF437 0.44 -0.5 461,076 - GFF437 0.44 -1.6 461,130 - GFF437 0.54 -0.8 461,130 - GFF437 0.54 +0.8 461,438 + +0.0 461,439 - +0.4 461,439 - -1.0 461,620 + GFF438 0.28 -1.5 461,621 - GFF438 0.28 -0.8 461,621 - GFF438 0.28 -0.4 461,621 - GFF438 0.28 -0.7 461,625 - GFF438 0.29 -1.0 461,625 - GFF438 0.29 -0.2 461,633 + GFF438 0.30 +0.5 461,633 + GFF438 0.30 -0.4 461,751 + GFF438 0.45 -1.9 461,752 - GFF438 0.45 +1.5
Or see this region's nucleotide sequence