Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4354 and GFF4355 are separated by 19 nucleotides GFF4355 and GFF4356 are separated by 358 nucleotides GFF4356 and GFF4357 are separated by 98 nucleotides
GFF4354 - hypothetical protein, at 138,348 to 139,811
GFF4354
GFF4355 - hypothetical protein, at 139,831 to 140,334
GFF4355
GFF4356 - D-3-phosphoglycerate dehydrogenase, at 140,693 to 141,952
GFF4356
GFF4357 - hypothetical protein, at 142,051 to 142,965
GFF4357
Position (kb) 140
141
142 Strain fitness (log2 ratio) -1
0
1 at 139.722 kb on + strand at 139.723 kb on - strand at 140.062 kb on + strand, within GFF4355 at 140.063 kb on - strand, within GFF4355 at 140.631 kb on + strand at 140.632 kb on - strand at 140.632 kb on - strand at 140.632 kb on - strand at 140.867 kb on + strand, within GFF4356 at 141.187 kb on + strand, within GFF4356 at 141.188 kb on - strand, within GFF4356 at 141.188 kb on - strand, within GFF4356 at 141.239 kb on + strand, within GFF4356 at 141.239 kb on + strand, within GFF4356 at 141.240 kb on - strand, within GFF4356 at 141.240 kb on - strand, within GFF4356 at 141.240 kb on - strand, within GFF4356 at 141.242 kb on + strand, within GFF4356 at 141.242 kb on + strand, within GFF4356 at 141.242 kb on + strand, within GFF4356 at 141.243 kb on - strand, within GFF4356 at 141.243 kb on - strand, within GFF4356 at 141.404 kb on + strand, within GFF4356 at 141.580 kb on + strand, within GFF4356 at 141.816 kb on - strand, within GFF4356 at 141.839 kb on + strand at 141.839 kb on + strand at 142.064 kb on + strand at 142.065 kb on - strand at 142.194 kb on + strand, within GFF4357 at 142.375 kb on + strand, within GFF4357 at 142.376 kb on - strand, within GFF4357 at 142.376 kb on - strand, within GFF4357 at 142.497 kb on - strand, within GFF4357 at 142.497 kb on - strand, within GFF4357 at 142.547 kb on + strand, within GFF4357 at 142.550 kb on - strand, within GFF4357
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 139,722 + -0.4 139,723 - +0.7 140,062 + GFF4355 0.46 -0.4 140,063 - GFF4355 0.46 -0.1 140,631 + -0.1 140,632 - -1.5 140,632 - -0.7 140,632 - -0.1 140,867 + GFF4356 0.14 -0.2 141,187 + GFF4356 0.39 -0.5 141,188 - GFF4356 0.39 -1.2 141,188 - GFF4356 0.39 +0.3 141,239 + GFF4356 0.43 -1.1 141,239 + GFF4356 0.43 -0.4 141,240 - GFF4356 0.43 -0.9 141,240 - GFF4356 0.43 -1.0 141,240 - GFF4356 0.43 -0.2 141,242 + GFF4356 0.44 -0.3 141,242 + GFF4356 0.44 -1.7 141,242 + GFF4356 0.44 -0.0 141,243 - GFF4356 0.44 +0.1 141,243 - GFF4356 0.44 -0.7 141,404 + GFF4356 0.56 -0.5 141,580 + GFF4356 0.70 -0.7 141,816 - GFF4356 0.89 -0.3 141,839 + -0.6 141,839 + -0.9 142,064 + -1.2 142,065 - +0.3 142,194 + GFF4357 0.16 -1.0 142,375 + GFF4357 0.35 -0.2 142,376 - GFF4357 0.36 +0.1 142,376 - GFF4357 0.36 +0.4 142,497 - GFF4357 0.49 -0.9 142,497 - GFF4357 0.49 +1.4 142,547 + GFF4357 0.54 +0.8 142,550 - GFF4357 0.55 +0.3
Or see this region's nucleotide sequence