Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4347 and GFF4348 overlap by 7 nucleotides GFF4348 and GFF4349 overlap by 35 nucleotides GFF4349 and GFF4350 are separated by 9 nucleotides GFF4350 and GFF4351 are separated by 153 nucleotides
GFF4347 - hypothetical protein, at 129,276 to 130,154
GFF4347
GFF4348 - hypothetical protein, at 130,148 to 131,026
GFF4348
GFF4349 - GTP 3',8-cyclase, at 130,992 to 132,107
GFF4349
GFF4350 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 132,117 to 132,821
GFF4350
GFF4351 - Multidrug resistance protein MdtE, at 132,975 to 134,108
GFF4351
Position (kb) 130
131
132
133 Strain fitness (log2 ratio) -1
0
1 at 130.198 kb on + strand at 130.198 kb on + strand at 130.198 kb on + strand at 130.199 kb on - strand at 130.479 kb on - strand, within GFF4348 at 130.556 kb on + strand, within GFF4348 at 130.557 kb on - strand, within GFF4348 at 130.571 kb on + strand, within GFF4348 at 130.572 kb on - strand, within GFF4348 at 130.572 kb on - strand, within GFF4348 at 130.572 kb on - strand, within GFF4348 at 130.924 kb on + strand, within GFF4348 at 131.024 kb on + strand at 131.024 kb on + strand at 131.025 kb on - strand at 131.184 kb on + strand, within GFF4349 at 131.184 kb on + strand, within GFF4349 at 131.185 kb on - strand, within GFF4349 at 131.231 kb on - strand, within GFF4349 at 131.445 kb on + strand, within GFF4349 at 131.445 kb on + strand, within GFF4349 at 131.446 kb on - strand, within GFF4349 at 131.446 kb on - strand, within GFF4349 at 131.446 kb on - strand, within GFF4349 at 131.446 kb on - strand, within GFF4349 at 131.475 kb on + strand, within GFF4349 at 131.475 kb on + strand, within GFF4349 at 131.475 kb on + strand, within GFF4349 at 131.476 kb on - strand, within GFF4349 at 131.476 kb on - strand, within GFF4349 at 131.497 kb on - strand, within GFF4349 at 131.620 kb on + strand, within GFF4349 at 131.620 kb on + strand, within GFF4349 at 131.620 kb on + strand, within GFF4349 at 131.620 kb on + strand, within GFF4349 at 131.621 kb on - strand, within GFF4349 at 131.621 kb on - strand, within GFF4349 at 131.621 kb on - strand, within GFF4349 at 131.621 kb on - strand, within GFF4349 at 131.655 kb on + strand, within GFF4349 at 131.655 kb on + strand, within GFF4349 at 131.700 kb on + strand, within GFF4349 at 131.700 kb on + strand, within GFF4349 at 131.700 kb on + strand, within GFF4349 at 131.785 kb on - strand, within GFF4349 at 131.811 kb on + strand, within GFF4349 at 131.812 kb on - strand, within GFF4349 at 131.812 kb on - strand, within GFF4349 at 132.328 kb on + strand, within GFF4350 at 132.329 kb on - strand, within GFF4350 at 132.329 kb on - strand, within GFF4350 at 132.352 kb on + strand, within GFF4350 at 132.505 kb on + strand, within GFF4350 at 132.506 kb on - strand, within GFF4350 at 132.886 kb on + strand at 132.887 kb on - strand at 132.887 kb on - strand at 132.887 kb on - strand at 132.887 kb on - strand at 132.888 kb on + strand at 132.889 kb on - strand at 132.919 kb on + strand at 132.920 kb on - strand at 132.938 kb on - strand at 132.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 130,198 + +0.4 130,198 + -0.9 130,198 + -0.5 130,199 - +0.3 130,479 - GFF4348 0.38 +1.4 130,556 + GFF4348 0.46 +0.4 130,557 - GFF4348 0.47 +0.3 130,571 + GFF4348 0.48 +0.3 130,572 - GFF4348 0.48 +0.7 130,572 - GFF4348 0.48 -0.3 130,572 - GFF4348 0.48 +0.9 130,924 + GFF4348 0.88 +0.8 131,024 + +1.0 131,024 + -1.0 131,025 - -0.1 131,184 + GFF4349 0.17 -0.5 131,184 + GFF4349 0.17 -0.1 131,185 - GFF4349 0.17 -0.6 131,231 - GFF4349 0.21 -0.4 131,445 + GFF4349 0.41 +0.3 131,445 + GFF4349 0.41 +0.4 131,446 - GFF4349 0.41 +0.6 131,446 - GFF4349 0.41 +0.3 131,446 - GFF4349 0.41 +0.5 131,446 - GFF4349 0.41 +1.0 131,475 + GFF4349 0.43 +1.4 131,475 + GFF4349 0.43 -0.3 131,475 + GFF4349 0.43 -1.6 131,476 - GFF4349 0.43 +0.1 131,476 - GFF4349 0.43 +0.6 131,497 - GFF4349 0.45 -0.5 131,620 + GFF4349 0.56 +0.1 131,620 + GFF4349 0.56 +1.0 131,620 + GFF4349 0.56 -0.7 131,620 + GFF4349 0.56 -0.4 131,621 - GFF4349 0.56 -0.4 131,621 - GFF4349 0.56 -0.7 131,621 - GFF4349 0.56 +0.0 131,621 - GFF4349 0.56 +0.4 131,655 + GFF4349 0.59 +0.1 131,655 + GFF4349 0.59 +0.4 131,700 + GFF4349 0.63 -1.0 131,700 + GFF4349 0.63 -0.2 131,700 + GFF4349 0.63 -0.2 131,785 - GFF4349 0.71 -0.7 131,811 + GFF4349 0.73 +0.1 131,812 - GFF4349 0.73 +0.0 131,812 - GFF4349 0.73 +1.6 132,328 + GFF4350 0.30 +0.8 132,329 - GFF4350 0.30 +1.6 132,329 - GFF4350 0.30 -0.4 132,352 + GFF4350 0.33 -0.2 132,505 + GFF4350 0.55 -0.8 132,506 - GFF4350 0.55 -0.0 132,886 + +0.9 132,887 - -1.4 132,887 - +0.1 132,887 - -1.0 132,887 - -0.3 132,888 + -1.3 132,889 - -1.7 132,919 + -0.3 132,920 - +0.1 132,938 - -0.4 132,949 - +1.0
Or see this region's nucleotide sequence