Strain Fitness in Xanthobacter sp. DMC5 around GFF4341

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4339 and GFF4340 are separated by 162 nucleotidesGFF4340 and GFF4341 are separated by 262 nucleotidesGFF4341 and GFF4342 are separated by 112 nucleotidesGFF4342 and GFF4343 are separated by 13 nucleotides GFF4339 - D-erythronate dehydrogenase, at 122,277 to 123,254 GFF4339 GFF4340 - hypothetical protein, at 123,417 to 123,875 GFF4340 GFF4341 - hypothetical protein, at 124,138 to 124,848 GFF4341 GFF4342 - Peptidoglycan-associated lipoprotein, at 124,961 to 125,566 GFF4342 GFF4343 - hypothetical protein, at 125,580 to 126,014 GFF4343 Position (kb) 124 125Strain fitness (log2 ratio) -2 -1 0 1 2at 123.418 kb on + strandat 123.798 kb on + strand, within GFF4340at 123.798 kb on + strand, within GFF4340at 123.798 kb on + strand, within GFF4340at 123.799 kb on - strand, within GFF4340at 123.891 kb on + strandat 124.026 kb on + strandat 124.026 kb on + strandat 125.205 kb on + strand, within GFF4342at 125.206 kb on - strand, within GFF4342at 125.372 kb on - strand, within GFF4342at 125.373 kb on + strand, within GFF4342at 125.374 kb on - strand, within GFF4342at 125.593 kb on + strandat 125.593 kb on + strandat 125.594 kb on - strandat 125.699 kb on - strand, within GFF4343at 125.836 kb on + strand, within GFF4343at 125.837 kb on - strand, within GFF4343

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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123,418 + +0.8
123,798 + GFF4340 0.83 -0.1
123,798 + GFF4340 0.83 +0.7
123,798 + GFF4340 0.83 -0.7
123,799 - GFF4340 0.83 +0.8
123,891 + -1.1
124,026 + -2.2
124,026 + +0.2
125,205 + GFF4342 0.40 +0.5
125,206 - GFF4342 0.40 -0.3
125,372 - GFF4342 0.68 +2.1
125,373 + GFF4342 0.68 +0.4
125,374 - GFF4342 0.68 +0.5
125,593 + +0.4
125,593 + +0.8
125,594 - +0.5
125,699 - GFF4343 0.27 +0.8
125,836 + GFF4343 0.59 -1.4
125,837 - GFF4343 0.59 -0.2

Or see this region's nucleotide sequence