Strain Fitness in Xanthobacter sp. DMC5 around GFF4318

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4317 and GFF4318 are separated by 8 nucleotidesGFF4318 and GFF4319 are separated by 138 nucleotides GFF4317 - Dihydroorotate dehydrogenase (quinone), at 96,685 to 97,755 GFF4317 GFF4318 - Orotate phosphoribosyltransferase, at 97,764 to 98,462 GFF4318 GFF4319 - hypothetical protein, at 98,601 to 99,848 GFF4319 Position (kb) 97 98 99Strain fitness (log2 ratio) -1 0 1at 98.509 kb on - strandat 98.509 kb on - strandat 98.509 kb on - strandat 98.511 kb on - strandat 98.511 kb on - strandat 98.644 kb on + strandat 98.645 kb on - strandat 99.328 kb on + strand, within GFF4319at 99.329 kb on - strand, within GFF4319

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
98,509 - +0.6
98,509 - +0.5
98,509 - -0.7
98,511 - -0.3
98,511 - -0.5
98,644 + -0.0
98,645 - -0.5
99,328 + GFF4319 0.58 +0.2
99,329 - GFF4319 0.58 +1.3

Or see this region's nucleotide sequence