Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4316 and GFF4317 are separated by 83 nucleotides GFF4317 and GFF4318 are separated by 8 nucleotides GFF4318 and GFF4319 are separated by 138 nucleotides
GFF4316 - Proline iminopeptidase, at 95,573 to 96,601
GFF4316
GFF4317 - Dihydroorotate dehydrogenase (quinone), at 96,685 to 97,755
GFF4317
GFF4318 - Orotate phosphoribosyltransferase, at 97,764 to 98,462
GFF4318
GFF4319 - hypothetical protein, at 98,601 to 99,848
GFF4319
Position (kb) 96
97
98 Strain fitness (log2 ratio) -1
0
1 at 95.835 kb on + strand, within GFF4316 at 95.836 kb on - strand, within GFF4316 at 95.836 kb on - strand, within GFF4316 at 95.889 kb on + strand, within GFF4316 at 95.928 kb on + strand, within GFF4316 at 95.929 kb on - strand, within GFF4316 at 96.328 kb on - strand, within GFF4316 at 96.456 kb on + strand, within GFF4316 at 96.456 kb on + strand, within GFF4316 at 96.457 kb on - strand, within GFF4316 at 96.457 kb on - strand, within GFF4316 at 96.457 kb on - strand, within GFF4316 at 96.610 kb on - strand at 96.610 kb on - strand at 96.672 kb on + strand at 96.673 kb on - strand at 96.673 kb on - strand at 98.509 kb on - strand at 98.509 kb on - strand at 98.509 kb on - strand at 98.511 kb on - strand at 98.511 kb on - strand at 98.644 kb on + strand at 98.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 95,835 + GFF4316 0.25 -0.2 95,836 - GFF4316 0.26 +0.3 95,836 - GFF4316 0.26 -1.5 95,889 + GFF4316 0.31 -0.4 95,928 + GFF4316 0.34 +1.4 95,929 - GFF4316 0.35 +0.4 96,328 - GFF4316 0.73 -0.2 96,456 + GFF4316 0.86 -0.9 96,456 + GFF4316 0.86 +0.4 96,457 - GFF4316 0.86 +0.3 96,457 - GFF4316 0.86 +0.7 96,457 - GFF4316 0.86 +0.8 96,610 - -0.0 96,610 - +0.1 96,672 + -0.5 96,673 - +0.1 96,673 - -1.5 98,509 - +0.6 98,509 - +0.5 98,509 - -0.7 98,511 - -0.3 98,511 - -0.5 98,644 + -0.0 98,645 - -0.5
Or see this region's nucleotide sequence