Strain Fitness in Xanthobacter sp. DMC5 around GFF4313

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4311 and GFF4312 are separated by 11 nucleotidesGFF4312 and GFF4313 are separated by 135 nucleotidesGFF4313 and GFF4314 are separated by 55 nucleotidesGFF4314 and GFF4315 are separated by 277 nucleotides GFF4311 - hypothetical protein, at 91,336 to 91,974 GFF4311 GFF4312 - Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, at 91,986 to 92,831 GFF4312 GFF4313 - 3-oxoacyl-[acyl-carrier-protein] synthase 1, at 92,967 to 94,184 GFF4313 GFF4314 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase, at 94,240 to 94,800 GFF4314 GFF4315 - Large-conductance mechanosensitive channel, at 95,078 to 95,548 GFF4315 Position (kb) 92 93 94 95Strain fitness (log2 ratio) -1 0 1at 94.893 kb on - strandat 94.898 kb on - strandat 95.014 kb on + strandat 95.072 kb on + strandat 95.171 kb on - strand, within GFF4315at 95.171 kb on - strand, within GFF4315

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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94,893 - +0.1
94,898 - -1.5
95,014 + -0.9
95,072 + -1.5
95,171 - GFF4315 0.20 +1.0
95,171 - GFF4315 0.20 +0.7

Or see this region's nucleotide sequence