Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4303 and GFF4304 overlap by 1 nucleotides GFF4304 and GFF4305 overlap by 1 nucleotides GFF4305 and GFF4306 are separated by 439 nucleotides
GFF4303 - Lipopolysaccharide export system ATP-binding protein LptB, at 83,013 to 83,774
GFF4303
GFF4304 - hypothetical protein, at 83,774 to 84,610
GFF4304
GFF4305 - High-affinity branched-chain amino acid transport system permease protein LivH, at 84,610 to 85,482
GFF4305
GFF4306 - hypothetical protein, at 85,922 to 87,628
GFF4306
Position (kb) 84
85
86 Strain fitness (log2 ratio) -2
-1
0
1
2 at 83.982 kb on + strand, within GFF4304 at 83.982 kb on + strand, within GFF4304 at 83.983 kb on - strand, within GFF4304 at 83.983 kb on - strand, within GFF4304 at 83.983 kb on - strand, within GFF4304 at 83.983 kb on - strand, within GFF4304 at 83.983 kb on - strand, within GFF4304 at 84.040 kb on - strand, within GFF4304 at 84.051 kb on + strand, within GFF4304 at 84.052 kb on - strand, within GFF4304 at 84.234 kb on + strand, within GFF4304 at 84.234 kb on + strand, within GFF4304 at 84.234 kb on + strand, within GFF4304 at 84.234 kb on + strand, within GFF4304 at 84.234 kb on + strand, within GFF4304 at 84.235 kb on - strand, within GFF4304 at 84.235 kb on - strand, within GFF4304 at 84.244 kb on - strand, within GFF4304 at 84.244 kb on - strand, within GFF4304 at 84.256 kb on - strand, within GFF4304 at 84.354 kb on + strand, within GFF4304 at 84.354 kb on + strand, within GFF4304 at 84.354 kb on + strand, within GFF4304 at 84.355 kb on - strand, within GFF4304 at 84.355 kb on - strand, within GFF4304 at 84.355 kb on - strand, within GFF4304 at 84.451 kb on + strand, within GFF4304 at 84.451 kb on + strand, within GFF4304 at 84.451 kb on + strand, within GFF4304 at 84.451 kb on + strand, within GFF4304 at 84.451 kb on + strand, within GFF4304 at 84.452 kb on - strand, within GFF4304 at 84.452 kb on - strand, within GFF4304 at 84.452 kb on - strand, within GFF4304 at 84.452 kb on - strand, within GFF4304 at 84.454 kb on - strand, within GFF4304 at 84.454 kb on - strand, within GFF4304 at 84.454 kb on - strand, within GFF4304 at 84.454 kb on - strand, within GFF4304 at 84.543 kb on + strand at 84.544 kb on - strand at 84.552 kb on + strand at 84.552 kb on + strand at 84.553 kb on - strand at 84.600 kb on + strand at 84.600 kb on + strand at 84.861 kb on - strand, within GFF4305 at 85.019 kb on + strand, within GFF4305 at 85.019 kb on + strand, within GFF4305 at 85.020 kb on - strand, within GFF4305 at 85.020 kb on - strand, within GFF4305 at 85.020 kb on - strand, within GFF4305 at 85.151 kb on + strand, within GFF4305 at 85.152 kb on - strand, within GFF4305 at 85.436 kb on + strand at 85.436 kb on + strand at 85.436 kb on + strand at 85.436 kb on + strand at 85.436 kb on + strand at 85.436 kb on + strand at 85.437 kb on - strand at 85.437 kb on - strand at 85.437 kb on - strand at 85.675 kb on + strand at 86.185 kb on + strand, within GFF4306 at 86.207 kb on + strand, within GFF4306 at 86.207 kb on + strand, within GFF4306 at 86.208 kb on - strand, within GFF4306 at 86.208 kb on - strand, within GFF4306 at 86.273 kb on + strand, within GFF4306 at 86.274 kb on - strand, within GFF4306 at 86.274 kb on - strand, within GFF4306 at 86.274 kb on - strand, within GFF4306 at 86.294 kb on + strand, within GFF4306 at 86.294 kb on + strand, within GFF4306
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 83,982 + GFF4304 0.25 -0.1 83,982 + GFF4304 0.25 -0.6 83,983 - GFF4304 0.25 +0.4 83,983 - GFF4304 0.25 +0.4 83,983 - GFF4304 0.25 -0.2 83,983 - GFF4304 0.25 +0.6 83,983 - GFF4304 0.25 -0.1 84,040 - GFF4304 0.32 -0.7 84,051 + GFF4304 0.33 +0.1 84,052 - GFF4304 0.33 -0.7 84,234 + GFF4304 0.55 +0.3 84,234 + GFF4304 0.55 -0.0 84,234 + GFF4304 0.55 -1.3 84,234 + GFF4304 0.55 -0.6 84,234 + GFF4304 0.55 +0.3 84,235 - GFF4304 0.55 +0.1 84,235 - GFF4304 0.55 -0.6 84,244 - GFF4304 0.56 -0.2 84,244 - GFF4304 0.56 +0.5 84,256 - GFF4304 0.58 +0.1 84,354 + GFF4304 0.69 +0.6 84,354 + GFF4304 0.69 -0.2 84,354 + GFF4304 0.69 +0.7 84,355 - GFF4304 0.69 +0.6 84,355 - GFF4304 0.69 +0.5 84,355 - GFF4304 0.69 +0.0 84,451 + GFF4304 0.81 -1.5 84,451 + GFF4304 0.81 -1.1 84,451 + GFF4304 0.81 +0.8 84,451 + GFF4304 0.81 -0.0 84,451 + GFF4304 0.81 +0.4 84,452 - GFF4304 0.81 +0.0 84,452 - GFF4304 0.81 -0.4 84,452 - GFF4304 0.81 -1.0 84,452 - GFF4304 0.81 +0.5 84,454 - GFF4304 0.81 -1.4 84,454 - GFF4304 0.81 -0.7 84,454 - GFF4304 0.81 -0.5 84,454 - GFF4304 0.81 +0.9 84,543 + +0.3 84,544 - +1.0 84,552 + -0.5 84,552 + -0.9 84,553 - -0.8 84,600 + -0.6 84,600 + +0.5 84,861 - GFF4305 0.29 -0.0 85,019 + GFF4305 0.47 -1.0 85,019 + GFF4305 0.47 +2.1 85,020 - GFF4305 0.47 -0.4 85,020 - GFF4305 0.47 -0.0 85,020 - GFF4305 0.47 +0.2 85,151 + GFF4305 0.62 +0.9 85,152 - GFF4305 0.62 -0.6 85,436 + +0.6 85,436 + +0.0 85,436 + -1.0 85,436 + -1.9 85,436 + -0.7 85,436 + +0.3 85,437 - +1.3 85,437 - -0.3 85,437 - -1.3 85,675 + -0.4 86,185 + GFF4306 0.15 +0.2 86,207 + GFF4306 0.17 -1.8 86,207 + GFF4306 0.17 +0.1 86,208 - GFF4306 0.17 -0.7 86,208 - GFF4306 0.17 +0.9 86,273 + GFF4306 0.21 +0.4 86,274 - GFF4306 0.21 +0.4 86,274 - GFF4306 0.21 +0.7 86,274 - GFF4306 0.21 -0.3 86,294 + GFF4306 0.22 +1.9 86,294 + GFF4306 0.22 +0.5
Or see this region's nucleotide sequence