Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF427 and GFF428 are separated by 727 nucleotides GFF428 and GFF429 are separated by 201 nucleotides
GFF427 - Ribonuclease E, at 446,608 to 449,895
GFF427
GFF428 - N-acetylmuramoyl-L-alanine amidase AmiC, at 450,623 to 451,933
GFF428
GFF429 - Sialic acid-binding periplasmic protein SiaP, at 452,135 to 453,124
GFF429
Position (kb) 450
451
452 Strain fitness (log2 ratio) -1
0
1 at 450.482 kb on - strand at 450.513 kb on + strand at 450.514 kb on - strand at 452.240 kb on + strand, within GFF429 at 452.240 kb on + strand, within GFF429 at 452.331 kb on - strand, within GFF429 at 452.432 kb on + strand, within GFF429 at 452.432 kb on + strand, within GFF429 at 452.453 kb on + strand, within GFF429 at 452.453 kb on + strand, within GFF429 at 452.454 kb on - strand, within GFF429 at 452.454 kb on - strand, within GFF429 at 452.454 kb on - strand, within GFF429 at 452.456 kb on + strand, within GFF429 at 452.462 kb on + strand, within GFF429 at 452.573 kb on + strand, within GFF429 at 452.574 kb on - strand, within GFF429 at 452.576 kb on + strand, within GFF429 at 452.666 kb on + strand, within GFF429 at 452.666 kb on + strand, within GFF429 at 452.667 kb on - strand, within GFF429 at 452.667 kb on - strand, within GFF429 at 452.667 kb on - strand, within GFF429 at 452.667 kb on - strand, within GFF429 at 452.726 kb on + strand, within GFF429 at 452.727 kb on - strand, within GFF429 at 452.727 kb on - strand, within GFF429 at 452.727 kb on - strand, within GFF429 at 452.727 kb on - strand, within GFF429
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 450,482 - +0.1 450,513 + -0.0 450,514 - -1.0 452,240 + GFF429 0.11 +0.3 452,240 + GFF429 0.11 -0.1 452,331 - GFF429 0.20 -0.6 452,432 + GFF429 0.30 -0.3 452,432 + GFF429 0.30 +0.2 452,453 + GFF429 0.32 -0.3 452,453 + GFF429 0.32 +0.3 452,454 - GFF429 0.32 -0.5 452,454 - GFF429 0.32 +1.5 452,454 - GFF429 0.32 +0.2 452,456 + GFF429 0.32 -0.1 452,462 + GFF429 0.33 -0.1 452,573 + GFF429 0.44 +0.2 452,574 - GFF429 0.44 +0.3 452,576 + GFF429 0.45 +1.1 452,666 + GFF429 0.54 +0.1 452,666 + GFF429 0.54 -0.3 452,667 - GFF429 0.54 +0.5 452,667 - GFF429 0.54 +0.6 452,667 - GFF429 0.54 +0.6 452,667 - GFF429 0.54 -0.5 452,726 + GFF429 0.60 -0.6 452,727 - GFF429 0.60 +0.2 452,727 - GFF429 0.60 -0.1 452,727 - GFF429 0.60 -0.1 452,727 - GFF429 0.60 +0.3
Or see this region's nucleotide sequence