Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4272 and GFF4273 are separated by 6 nucleotides GFF4273 and GFF4274 are separated by 200 nucleotides GFF4274 and GFF4275 are separated by 118 nucleotides
GFF4272 - Long-chain-fatty-acid--CoA ligase, at 40,911 to 42,536
GFF4272
GFF4273 - hypothetical protein, at 42,543 to 42,764
GFF4273
GFF4274 - Vitamin B12 transport ATP-binding protein BacA, at 42,965 to 44,743
GFF4274
GFF4275 - H(+)/Cl(-) exchange transporter ClcA, at 44,862 to 46,226
GFF4275
Position (kb) 42
43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 42.003 kb on + strand, within GFF4272 at 42.003 kb on + strand, within GFF4272 at 42.004 kb on - strand, within GFF4272 at 42.004 kb on - strand, within GFF4272 at 42.103 kb on + strand, within GFF4272 at 42.103 kb on + strand, within GFF4272 at 42.103 kb on + strand, within GFF4272 at 42.104 kb on - strand, within GFF4272 at 42.118 kb on - strand, within GFF4272 at 42.118 kb on - strand, within GFF4272 at 42.288 kb on + strand, within GFF4272 at 42.288 kb on + strand, within GFF4272 at 42.288 kb on + strand, within GFF4272 at 42.288 kb on + strand, within GFF4272 at 42.288 kb on + strand, within GFF4272 at 42.438 kb on + strand at 42.439 kb on - strand at 42.858 kb on + strand at 43.014 kb on + strand at 43.014 kb on + strand at 43.021 kb on - strand at 43.052 kb on + strand at 43.167 kb on - strand, within GFF4274 at 43.176 kb on + strand, within GFF4274 at 43.177 kb on - strand, within GFF4274 at 43.177 kb on - strand, within GFF4274 at 43.177 kb on - strand, within GFF4274 at 43.260 kb on - strand, within GFF4274 at 43.268 kb on + strand, within GFF4274 at 43.269 kb on - strand, within GFF4274 at 43.352 kb on + strand, within GFF4274 at 43.559 kb on + strand, within GFF4274 at 43.560 kb on - strand, within GFF4274 at 43.584 kb on - strand, within GFF4274 at 43.658 kb on + strand, within GFF4274 at 43.659 kb on - strand, within GFF4274 at 43.836 kb on - strand, within GFF4274 at 43.862 kb on + strand, within GFF4274 at 43.883 kb on + strand, within GFF4274 at 43.976 kb on + strand, within GFF4274 at 43.976 kb on + strand, within GFF4274 at 43.977 kb on - strand, within GFF4274 at 44.017 kb on + strand, within GFF4274 at 44.318 kb on + strand, within GFF4274 at 44.318 kb on + strand, within GFF4274 at 44.318 kb on + strand, within GFF4274 at 44.319 kb on - strand, within GFF4274 at 44.319 kb on - strand, within GFF4274 at 44.319 kb on - strand, within GFF4274 at 44.319 kb on - strand, within GFF4274 at 44.585 kb on + strand at 44.585 kb on + strand at 44.586 kb on - strand at 44.807 kb on - strand at 44.904 kb on + strand at 44.908 kb on - strand at 44.908 kb on - strand at 45.435 kb on + strand, within GFF4275 at 45.435 kb on + strand, within GFF4275 at 45.436 kb on - strand, within GFF4275 at 45.436 kb on - strand, within GFF4275 at 45.436 kb on - strand, within GFF4275 at 45.437 kb on + strand, within GFF4275 at 45.438 kb on - strand, within GFF4275 at 45.438 kb on - strand, within GFF4275 at 45.438 kb on - strand, within GFF4275 at 45.510 kb on - strand, within GFF4275 at 45.657 kb on + strand, within GFF4275 at 45.658 kb on - strand, within GFF4275 at 45.658 kb on - strand, within GFF4275 at 45.660 kb on - strand, within GFF4275 at 45.660 kb on - strand, within GFF4275
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 42,003 + GFF4272 0.67 -0.4 42,003 + GFF4272 0.67 -2.0 42,004 - GFF4272 0.67 +0.2 42,004 - GFF4272 0.67 -0.6 42,103 + GFF4272 0.73 +0.4 42,103 + GFF4272 0.73 +0.4 42,103 + GFF4272 0.73 -0.6 42,104 - GFF4272 0.73 -0.1 42,118 - GFF4272 0.74 -0.0 42,118 - GFF4272 0.74 +0.4 42,288 + GFF4272 0.85 -0.2 42,288 + GFF4272 0.85 -2.0 42,288 + GFF4272 0.85 -1.0 42,288 + GFF4272 0.85 +0.6 42,288 + GFF4272 0.85 -0.9 42,438 + -0.1 42,439 - +0.1 42,858 + +0.3 43,014 + +1.0 43,014 + +0.3 43,021 - -0.3 43,052 + +1.1 43,167 - GFF4274 0.11 +0.9 43,176 + GFF4274 0.12 -0.3 43,177 - GFF4274 0.12 +0.1 43,177 - GFF4274 0.12 +2.0 43,177 - GFF4274 0.12 -0.1 43,260 - GFF4274 0.17 -0.2 43,268 + GFF4274 0.17 +0.3 43,269 - GFF4274 0.17 -0.0 43,352 + GFF4274 0.22 -0.6 43,559 + GFF4274 0.33 -0.2 43,560 - GFF4274 0.33 -0.0 43,584 - GFF4274 0.35 -0.1 43,658 + GFF4274 0.39 +0.4 43,659 - GFF4274 0.39 +0.9 43,836 - GFF4274 0.49 +1.4 43,862 + GFF4274 0.50 -0.5 43,883 + GFF4274 0.52 +0.8 43,976 + GFF4274 0.57 +0.7 43,976 + GFF4274 0.57 -0.0 43,977 - GFF4274 0.57 -0.4 44,017 + GFF4274 0.59 +1.3 44,318 + GFF4274 0.76 -0.3 44,318 + GFF4274 0.76 +0.7 44,318 + GFF4274 0.76 +1.4 44,319 - GFF4274 0.76 -0.2 44,319 - GFF4274 0.76 -0.8 44,319 - GFF4274 0.76 +0.7 44,319 - GFF4274 0.76 -1.3 44,585 + -0.7 44,585 + +1.4 44,586 - +0.4 44,807 - -0.4 44,904 + -0.8 44,908 - -0.5 44,908 - +0.2 45,435 + GFF4275 0.42 +0.1 45,435 + GFF4275 0.42 +0.5 45,436 - GFF4275 0.42 +0.0 45,436 - GFF4275 0.42 +0.9 45,436 - GFF4275 0.42 -0.2 45,437 + GFF4275 0.42 -0.8 45,438 - GFF4275 0.42 -0.7 45,438 - GFF4275 0.42 -2.0 45,438 - GFF4275 0.42 +0.1 45,510 - GFF4275 0.47 -0.3 45,657 + GFF4275 0.58 +0.0 45,658 - GFF4275 0.58 -0.0 45,658 - GFF4275 0.58 +0.3 45,660 - GFF4275 0.58 +0.9 45,660 - GFF4275 0.58 +0.6
Or see this region's nucleotide sequence