Strain Fitness in Xanthobacter sp. DMC5 around GFF4271

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4269 and GFF4270 overlap by 55 nucleotidesGFF4270 and GFF4271 are separated by 85 nucleotidesGFF4271 and GFF4272 are separated by 238 nucleotides GFF4269 - hypothetical protein, at 37,991 to 38,308 GFF4269 GFF4270 - hypothetical protein, at 38,254 to 38,670 GFF4270 GFF4271 - Acetyl-coenzyme A synthetase, at 38,756 to 40,672 GFF4271 GFF4272 - Long-chain-fatty-acid--CoA ligase, at 40,911 to 42,536 GFF4272 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 37.850 kb on - strandat 37.906 kb on - strandat 38.149 kb on - strand, within GFF4269at 38.268 kb on - strandat 38.270 kb on - strandat 38.276 kb on + strandat 38.277 kb on - strandat 38.277 kb on - strandat 38.277 kb on - strandat 38.539 kb on + strand, within GFF4270at 38.539 kb on + strand, within GFF4270at 38.566 kb on + strand, within GFF4270at 38.567 kb on - strand, within GFF4270at 38.638 kb on + strandat 38.638 kb on + strandat 38.638 kb on + strandat 38.638 kb on + strandat 38.638 kb on + strandat 38.639 kb on - strandat 38.639 kb on - strandat 38.734 kb on - strandat 38.857 kb on - strandat 39.184 kb on - strand, within GFF4271at 39.222 kb on + strand, within GFF4271at 39.223 kb on - strand, within GFF4271at 39.223 kb on - strand, within GFF4271at 39.246 kb on + strand, within GFF4271at 39.492 kb on - strand, within GFF4271at 39.729 kb on + strand, within GFF4271at 39.729 kb on + strand, within GFF4271at 39.765 kb on + strand, within GFF4271at 39.774 kb on + strand, within GFF4271at 39.775 kb on - strand, within GFF4271at 39.775 kb on - strand, within GFF4271at 39.841 kb on - strand, within GFF4271at 39.876 kb on + strand, within GFF4271at 39.928 kb on + strand, within GFF4271at 39.928 kb on + strand, within GFF4271at 39.929 kb on - strand, within GFF4271at 39.930 kb on + strand, within GFF4271at 39.930 kb on + strand, within GFF4271at 39.931 kb on - strand, within GFF4271at 39.931 kb on - strand, within GFF4271at 39.940 kb on - strand, within GFF4271at 40.040 kb on + strand, within GFF4271at 40.131 kb on + strand, within GFF4271at 40.132 kb on - strand, within GFF4271at 40.311 kb on + strand, within GFF4271at 40.312 kb on - strand, within GFF4271at 40.312 kb on - strand, within GFF4271at 40.395 kb on + strand, within GFF4271at 40.395 kb on + strand, within GFF4271at 40.395 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.435 kb on - strand, within GFF4271at 40.435 kb on - strand, within GFF4271at 40.636 kb on - strandat 40.750 kb on - strandat 40.750 kb on - strandat 40.794 kb on + strandat 40.794 kb on + strandat 40.795 kb on - strandat 40.843 kb on - strandat 40.923 kb on + strandat 40.923 kb on + strandat 40.923 kb on + strandat 40.924 kb on - strandat 41.049 kb on + strandat 41.050 kb on - strandat 41.061 kb on + strandat 41.062 kb on - strandat 41.169 kb on + strand, within GFF4272at 41.170 kb on - strand, within GFF4272at 41.397 kb on + strand, within GFF4272at 41.397 kb on + strand, within GFF4272at 41.398 kb on - strand, within GFF4272at 41.479 kb on - strand, within GFF4272at 41.479 kb on - strand, within GFF4272at 41.480 kb on + strand, within GFF4272at 41.481 kb on - strand, within GFF4272at 41.481 kb on - strand, within GFF4272at 41.481 kb on - strand, within GFF4272at 41.517 kb on + strand, within GFF4272at 41.517 kb on + strand, within GFF4272

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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37,850 - +0.5
37,906 - -1.2
38,149 - GFF4269 0.50 +0.0
38,268 - -1.9
38,270 - -1.5
38,276 + -0.3
38,277 - +1.9
38,277 - -0.1
38,277 - -0.5
38,539 + GFF4270 0.68 +0.1
38,539 + GFF4270 0.68 -0.3
38,566 + GFF4270 0.75 +0.4
38,567 - GFF4270 0.75 -2.3
38,638 + -1.0
38,638 + -0.5
38,638 + +0.2
38,638 + +0.1
38,638 + +1.1
38,639 - -0.9
38,639 - -1.9
38,734 - +0.4
38,857 - +0.5
39,184 - GFF4271 0.22 -0.6
39,222 + GFF4271 0.24 +1.9
39,223 - GFF4271 0.24 +1.1
39,223 - GFF4271 0.24 -2.0
39,246 + GFF4271 0.26 -0.0
39,492 - GFF4271 0.38 +0.7
39,729 + GFF4271 0.51 +0.5
39,729 + GFF4271 0.51 -0.3
39,765 + GFF4271 0.53 -0.2
39,774 + GFF4271 0.53 -0.2
39,775 - GFF4271 0.53 -0.4
39,775 - GFF4271 0.53 -1.5
39,841 - GFF4271 0.57 -0.6
39,876 + GFF4271 0.58 +0.1
39,928 + GFF4271 0.61 -0.9
39,928 + GFF4271 0.61 -0.2
39,929 - GFF4271 0.61 -0.1
39,930 + GFF4271 0.61 +0.6
39,930 + GFF4271 0.61 -0.0
39,931 - GFF4271 0.61 +0.6
39,931 - GFF4271 0.61 -0.2
39,940 - GFF4271 0.62 +0.0
40,040 + GFF4271 0.67 -0.4
40,131 + GFF4271 0.72 +0.3
40,132 - GFF4271 0.72 -0.2
40,311 + GFF4271 0.81 +0.6
40,312 - GFF4271 0.81 +0.7
40,312 - GFF4271 0.81 -0.4
40,395 + GFF4271 0.85 -0.8
40,395 + GFF4271 0.85 -0.3
40,395 + GFF4271 0.85 -0.6
40,434 + GFF4271 0.88 +0.3
40,434 + GFF4271 0.88 +0.1
40,434 + GFF4271 0.88 -1.0
40,434 + GFF4271 0.88 +1.0
40,434 + GFF4271 0.88 +1.0
40,434 + GFF4271 0.88 -0.3
40,434 + GFF4271 0.88 -0.1
40,435 - GFF4271 0.88 +0.1
40,435 - GFF4271 0.88 -0.5
40,636 - +0.1
40,750 - -1.3
40,750 - -0.9
40,794 + -1.4
40,794 + -0.6
40,795 - +0.0
40,843 - -0.3
40,923 + +0.0
40,923 + +1.1
40,923 + -0.8
40,924 - -1.2
41,049 + -0.5
41,050 - -0.8
41,061 + -0.1
41,062 - -0.1
41,169 + GFF4272 0.16 +0.1
41,170 - GFF4272 0.16 -0.3
41,397 + GFF4272 0.30 +0.2
41,397 + GFF4272 0.30 -2.7
41,398 - GFF4272 0.30 -0.5
41,479 - GFF4272 0.35 +0.2
41,479 - GFF4272 0.35 -0.1
41,480 + GFF4272 0.35 -0.1
41,481 - GFF4272 0.35 +1.0
41,481 - GFF4272 0.35 +1.7
41,481 - GFF4272 0.35 -0.4
41,517 + GFF4272 0.37 -1.6
41,517 + GFF4272 0.37 -0.9

Or see this region's nucleotide sequence