Strain Fitness in Xanthobacter sp. DMC5 around GFF427

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF426 and GFF427 are separated by 462 nucleotidesGFF427 and GFF428 are separated by 727 nucleotides GFF426 - Penicillin-binding protein 1A, at 443,722 to 446,145 GFF426 GFF427 - Ribonuclease E, at 446,608 to 449,895 GFF427 GFF428 - N-acetylmuramoyl-L-alanine amidase AmiC, at 450,623 to 451,933 GFF428 Position (kb) 446 447 448 449 450Strain fitness (log2 ratio) -2 -1 0 1at 446.184 kb on - strandat 446.341 kb on - strandat 446.411 kb on - strandat 446.758 kb on - strandat 450.482 kb on - strandat 450.513 kb on + strandat 450.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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446,184 - -0.0
446,341 - +0.2
446,411 - -2.1
446,758 - +0.7
450,482 - +0.1
450,513 + -0.0
450,514 - -1.0

Or see this region's nucleotide sequence