Strain Fitness in Xanthobacter sp. DMC5 around GFF426

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF425 and GFF426 are separated by 373 nucleotidesGFF426 and GFF427 are separated by 462 nucleotides GFF425 - Oxygen sensor protein DosP, at 440,856 to 443,348 GFF425 GFF426 - Penicillin-binding protein 1A, at 443,722 to 446,145 GFF426 GFF427 - Ribonuclease E, at 446,608 to 449,895 GFF427 Position (kb) 443 444 445 446 447Strain fitness (log2 ratio) -2 -1 0 1at 442.936 kb on + strand, within GFF425at 442.936 kb on + strand, within GFF425at 442.937 kb on - strand, within GFF425at 443.062 kb on + strand, within GFF425at 443.065 kb on + strand, within GFF425at 443.066 kb on - strand, within GFF425at 443.066 kb on - strand, within GFF425at 443.336 kb on + strandat 443.337 kb on - strandat 443.337 kb on - strandat 443.367 kb on + strandat 443.423 kb on + strandat 443.424 kb on - strandat 443.450 kb on + strandat 443.456 kb on - strandat 443.456 kb on - strandat 443.459 kb on + strandat 443.558 kb on - strandat 443.811 kb on - strandat 446.184 kb on - strandat 446.341 kb on - strandat 446.411 kb on - strandat 446.758 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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442,936 + GFF425 0.83 -0.2
442,936 + GFF425 0.83 -0.3
442,937 - GFF425 0.83 +0.4
443,062 + GFF425 0.88 +0.3
443,065 + GFF425 0.89 +0.8
443,066 - GFF425 0.89 -1.7
443,066 - GFF425 0.89 +0.2
443,336 + +0.3
443,337 - -1.1
443,337 - -0.4
443,367 + -0.2
443,423 + +0.7
443,424 - -0.8
443,450 + +0.1
443,456 - -0.3
443,456 - -1.3
443,459 + +0.5
443,558 - +0.7
443,811 - -0.3
446,184 - -0.0
446,341 - +0.2
446,411 - -2.1
446,758 - +0.7

Or see this region's nucleotide sequence