Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF422 and GFF423 are separated by 158 nucleotides GFF423 and GFF424 are separated by 143 nucleotides GFF424 and GFF425 are separated by 99 nucleotides
GFF422 - hypothetical protein, at 438,356 to 438,895
GFF422
GFF423 - hypothetical protein, at 439,054 to 439,482
GFF423
GFF424 - Peptide chain release factor RF2, at 439,626 to 440,756
GFF424
GFF425 - Oxygen sensor protein DosP, at 440,856 to 443,348
GFF425
Position (kb) 439
440
441 Strain fitness (log2 ratio) -1
0
1 at 438.748 kb on - strand, within GFF422 at 438.748 kb on - strand, within GFF422 at 438.775 kb on - strand, within GFF422 at 438.775 kb on - strand, within GFF422 at 438.877 kb on + strand at 438.878 kb on - strand at 438.878 kb on - strand at 439.065 kb on + strand at 439.295 kb on + strand, within GFF423 at 439.296 kb on - strand, within GFF423 at 439.296 kb on - strand, within GFF423 at 439.337 kb on + strand, within GFF423 at 439.338 kb on - strand, within GFF423 at 439.451 kb on + strand at 439.451 kb on + strand at 439.663 kb on + strand at 441.143 kb on - strand, within GFF425 at 441.257 kb on + strand, within GFF425 at 441.258 kb on - strand, within GFF425 at 441.258 kb on - strand, within GFF425 at 441.448 kb on + strand, within GFF425 at 441.448 kb on + strand, within GFF425 at 441.449 kb on - strand, within GFF425
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 438,748 - GFF422 0.73 -0.5 438,748 - GFF422 0.73 +0.3 438,775 - GFF422 0.78 +0.3 438,775 - GFF422 0.78 +0.5 438,877 + -1.7 438,878 - +0.0 438,878 - -0.1 439,065 + -1.6 439,295 + GFF423 0.56 -1.2 439,296 - GFF423 0.56 -1.2 439,296 - GFF423 0.56 -0.9 439,337 + GFF423 0.66 -0.1 439,338 - GFF423 0.66 +0.6 439,451 + -0.1 439,451 + +0.4 439,663 + -0.7 441,143 - GFF425 0.12 -0.3 441,257 + GFF425 0.16 -0.8 441,258 - GFF425 0.16 +0.7 441,258 - GFF425 0.16 -1.3 441,448 + GFF425 0.24 -0.6 441,448 + GFF425 0.24 -0.1 441,449 - GFF425 0.24 -0.3
Or see this region's nucleotide sequence