Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4229 and GFF4230 are separated by 220 nucleotides GFF4230 and GFF4231 are separated by 25 nucleotides GFF4231 and GFF4232 are separated by 21 nucleotides GFF4232 and GFF4233 overlap by 1 nucleotides
GFF4229 - Methanesulfonate monooxygenase, at 1,961 to 3,184
GFF4229
GFF4230 - FMN reductase (NADH) RutF, at 3,405 to 3,965
GFF4230
GFF4231 - Putative aliphatic sulfonates-binding protein, at 3,991 to 4,950
GFF4231
GFF4232 - Putative aliphatic sulfonates transport permease protein SsuC, at 4,972 to 5,853
GFF4232
GFF4233 - Aliphatic sulfonates import ATP-binding protein SsuB, at 5,853 to 6,668
GFF4233
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.031 kb on - strand, within GFF4229 at 3.031 kb on - strand, within GFF4229 at 3.073 kb on - strand at 3.073 kb on - strand at 3.285 kb on + strand at 3.285 kb on + strand at 3.285 kb on + strand at 3.286 kb on - strand at 3.945 kb on + strand at 3.946 kb on - strand at 3.980 kb on - strand at 4.178 kb on - strand, within GFF4231 at 4.309 kb on + strand, within GFF4231 at 4.309 kb on + strand, within GFF4231 at 4.309 kb on + strand, within GFF4231 at 4.309 kb on + strand, within GFF4231 at 4.309 kb on + strand, within GFF4231 at 4.318 kb on + strand, within GFF4231 at 4.319 kb on - strand, within GFF4231 at 4.435 kb on + strand, within GFF4231 at 4.435 kb on + strand, within GFF4231 at 4.435 kb on + strand, within GFF4231 at 4.436 kb on - strand, within GFF4231 at 4.436 kb on - strand, within GFF4231 at 4.436 kb on - strand, within GFF4231 at 4.436 kb on - strand, within GFF4231 at 4.637 kb on - strand, within GFF4231 at 4.637 kb on - strand, within GFF4231 at 4.645 kb on + strand, within GFF4231 at 4.646 kb on - strand, within GFF4231 at 4.646 kb on - strand, within GFF4231 at 4.646 kb on - strand, within GFF4231 at 4.822 kb on + strand, within GFF4231 at 4.823 kb on - strand, within GFF4231 at 5.441 kb on + strand, within GFF4232 at 5.441 kb on + strand, within GFF4232 at 5.442 kb on - strand, within GFF4232 at 5.476 kb on + strand, within GFF4232 at 5.476 kb on + strand, within GFF4232 at 5.476 kb on + strand, within GFF4232 at 5.477 kb on - strand, within GFF4232 at 5.477 kb on - strand, within GFF4232 at 5.540 kb on - strand, within GFF4232 at 5.540 kb on - strand, within GFF4232 at 5.647 kb on - strand, within GFF4232 at 5.686 kb on + strand, within GFF4232 at 5.687 kb on - strand, within GFF4232 at 5.687 kb on - strand, within GFF4232 at 5.749 kb on + strand, within GFF4232 at 5.825 kb on - strand at 5.924 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 3,031 - GFF4229 0.87 +0.6 3,031 - GFF4229 0.87 +0.4 3,073 - -0.4 3,073 - -0.5 3,285 + +1.0 3,285 + -1.7 3,285 + +0.2 3,286 - -1.8 3,945 + -1.6 3,946 - -0.0 3,980 - -0.7 4,178 - GFF4231 0.19 +0.9 4,309 + GFF4231 0.33 -0.1 4,309 + GFF4231 0.33 -0.1 4,309 + GFF4231 0.33 -0.0 4,309 + GFF4231 0.33 +0.6 4,309 + GFF4231 0.33 +0.1 4,318 + GFF4231 0.34 +0.1 4,319 - GFF4231 0.34 -0.7 4,435 + GFF4231 0.46 +1.1 4,435 + GFF4231 0.46 -0.3 4,435 + GFF4231 0.46 +2.4 4,436 - GFF4231 0.46 -0.6 4,436 - GFF4231 0.46 -0.1 4,436 - GFF4231 0.46 -0.8 4,436 - GFF4231 0.46 +0.4 4,637 - GFF4231 0.67 -0.6 4,637 - GFF4231 0.67 +0.5 4,645 + GFF4231 0.68 -0.2 4,646 - GFF4231 0.68 +1.2 4,646 - GFF4231 0.68 -0.9 4,646 - GFF4231 0.68 +0.4 4,822 + GFF4231 0.87 +0.2 4,823 - GFF4231 0.87 -0.7 5,441 + GFF4232 0.53 -1.4 5,441 + GFF4232 0.53 +0.1 5,442 - GFF4232 0.53 -0.1 5,476 + GFF4232 0.57 +0.8 5,476 + GFF4232 0.57 -0.9 5,476 + GFF4232 0.57 +0.1 5,477 - GFF4232 0.57 +0.2 5,477 - GFF4232 0.57 +0.1 5,540 - GFF4232 0.64 -0.2 5,540 - GFF4232 0.64 +0.2 5,647 - GFF4232 0.77 -0.4 5,686 + GFF4232 0.81 -0.0 5,687 - GFF4232 0.81 +0.8 5,687 - GFF4232 0.81 -0.4 5,749 + GFF4232 0.88 -1.0 5,825 - -0.5 5,924 + +0.6
Or see this region's nucleotide sequence