Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4224 and GFF4225 are separated by 156 nucleotides GFF4225 and GFF4226 are separated by 49 nucleotides
GFF4224 - hypothetical protein, at 253,672 to 254,346
GFF4224
GFF4225 - Dicamba O-demethylase 1, ferredoxin reductase component, at 254,503 to 255,738
GFF4225
GFF4226 - hypothetical protein, at 255,788 to 257,356
GFF4226
Position (kb) 254
255
256 Strain fitness (log2 ratio) -1
0
1 at 253.551 kb on + strand at 253.552 kb on - strand at 253.552 kb on - strand at 253.697 kb on - strand at 253.906 kb on + strand, within GFF4224 at 253.967 kb on - strand, within GFF4224 at 254.170 kb on + strand, within GFF4224 at 254.172 kb on + strand, within GFF4224 at 254.172 kb on + strand, within GFF4224 at 254.173 kb on - strand, within GFF4224 at 254.173 kb on - strand, within GFF4224 at 254.249 kb on - strand, within GFF4224 at 254.610 kb on - strand at 254.610 kb on - strand at 254.663 kb on + strand, within GFF4225 at 254.664 kb on - strand, within GFF4225 at 254.750 kb on + strand, within GFF4225 at 255.540 kb on - strand, within GFF4225 at 255.573 kb on - strand, within GFF4225 at 255.644 kb on + strand at 255.645 kb on - strand at 256.020 kb on - strand, within GFF4226 at 256.231 kb on + strand, within GFF4226 at 256.307 kb on - strand, within GFF4226 at 256.346 kb on + strand, within GFF4226 at 256.401 kb on - strand, within GFF4226
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 253,551 + +0.2 253,552 - -0.4 253,552 - -0.5 253,697 - -0.5 253,906 + GFF4224 0.35 +0.0 253,967 - GFF4224 0.44 +0.0 254,170 + GFF4224 0.74 -0.2 254,172 + GFF4224 0.74 -0.5 254,172 + GFF4224 0.74 -0.2 254,173 - GFF4224 0.74 +0.6 254,173 - GFF4224 0.74 +0.4 254,249 - GFF4224 0.85 -0.3 254,610 - +1.6 254,610 - +0.6 254,663 + GFF4225 0.13 +1.7 254,664 - GFF4225 0.13 -0.5 254,750 + GFF4225 0.20 -1.1 255,540 - GFF4225 0.84 +0.1 255,573 - GFF4225 0.87 -1.5 255,644 + -0.2 255,645 - -0.7 256,020 - GFF4226 0.15 +0.0 256,231 + GFF4226 0.28 +0.0 256,307 - GFF4226 0.33 -0.5 256,346 + GFF4226 0.36 +0.7 256,401 - GFF4226 0.39 +1.1
Or see this region's nucleotide sequence