Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4221 and GFF4222 are separated by 215 nucleotides GFF4222 and GFF4223 are separated by 7 nucleotides
GFF4221 - Acetyl-CoA:oxalate CoA-transferase, at 249,570 to 250,706
GFF4221
GFF4222 - Monoterpene epsilon-lactone hydrolase, at 250,922 to 251,848
GFF4222
GFF4223 - Phenylacetate-coenzyme A ligase, at 251,856 to 253,181
GFF4223
Position (kb) 250
251
252 Strain fitness (log2 ratio) -2
-1
0
1 at 249.973 kb on - strand, within GFF4221 at 249.973 kb on - strand, within GFF4221 at 250.248 kb on + strand, within GFF4221 at 250.248 kb on + strand, within GFF4221 at 250.249 kb on - strand, within GFF4221 at 250.263 kb on + strand, within GFF4221 at 250.263 kb on + strand, within GFF4221 at 250.263 kb on + strand, within GFF4221 at 250.264 kb on - strand, within GFF4221 at 250.264 kb on - strand, within GFF4221 at 250.464 kb on - strand, within GFF4221 at 250.693 kb on + strand at 250.694 kb on - strand at 250.694 kb on - strand at 250.824 kb on + strand at 250.824 kb on + strand at 250.824 kb on + strand at 250.824 kb on + strand at 250.844 kb on - strand at 250.907 kb on - strand at 251.214 kb on + strand, within GFF4222 at 251.215 kb on - strand, within GFF4222 at 251.215 kb on - strand, within GFF4222 at 251.215 kb on - strand, within GFF4222 at 251.280 kb on + strand, within GFF4222 at 251.280 kb on + strand, within GFF4222 at 251.281 kb on - strand, within GFF4222 at 251.281 kb on - strand, within GFF4222 at 251.281 kb on - strand, within GFF4222 at 251.610 kb on + strand, within GFF4222 at 251.610 kb on + strand, within GFF4222 at 251.936 kb on + strand at 252.076 kb on + strand, within GFF4223 at 252.076 kb on + strand, within GFF4223 at 252.077 kb on - strand, within GFF4223 at 252.405 kb on + strand, within GFF4223 at 252.476 kb on - strand, within GFF4223 at 252.476 kb on - strand, within GFF4223 at 252.662 kb on - strand, within GFF4223 at 252.662 kb on - strand, within GFF4223 at 252.788 kb on - strand, within GFF4223 at 252.797 kb on - strand, within GFF4223
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 249,973 - GFF4221 0.35 -0.5 249,973 - GFF4221 0.35 -1.1 250,248 + GFF4221 0.60 -1.1 250,248 + GFF4221 0.60 +0.2 250,249 - GFF4221 0.60 +1.0 250,263 + GFF4221 0.61 -0.6 250,263 + GFF4221 0.61 -0.3 250,263 + GFF4221 0.61 +0.4 250,264 - GFF4221 0.61 +0.5 250,264 - GFF4221 0.61 -0.8 250,464 - GFF4221 0.79 -0.7 250,693 + +0.9 250,694 - +1.0 250,694 - +0.1 250,824 + -0.6 250,824 + +0.2 250,824 + -0.3 250,824 + +0.4 250,844 - -0.1 250,907 - -0.5 251,214 + GFF4222 0.31 -1.5 251,215 - GFF4222 0.32 +0.3 251,215 - GFF4222 0.32 -0.3 251,215 - GFF4222 0.32 -1.1 251,280 + GFF4222 0.39 +1.2 251,280 + GFF4222 0.39 -0.3 251,281 - GFF4222 0.39 -0.2 251,281 - GFF4222 0.39 -1.0 251,281 - GFF4222 0.39 +0.8 251,610 + GFF4222 0.74 +0.2 251,610 + GFF4222 0.74 -0.2 251,936 + -2.3 252,076 + GFF4223 0.17 -0.3 252,076 + GFF4223 0.17 +0.7 252,077 - GFF4223 0.17 +0.2 252,405 + GFF4223 0.41 -0.7 252,476 - GFF4223 0.47 +0.0 252,476 - GFF4223 0.47 -0.3 252,662 - GFF4223 0.61 +0.1 252,662 - GFF4223 0.61 +0.0 252,788 - GFF4223 0.70 +0.4 252,797 - GFF4223 0.71 -0.6
Or see this region's nucleotide sequence