Strain Fitness in Xanthobacter sp. DMC5 around GFF4208

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4207 and GFF4208 are separated by 10 nucleotidesGFF4208 and GFF4209 are separated by 222 nucleotides GFF4207 - Acetate kinase, at 232,462 to 233,673 GFF4207 GFF4208 - hypothetical protein, at 233,684 to 235,975 GFF4208 GFF4209 - Efflux pump periplasmic linker BepF, at 236,198 to 237,325 GFF4209 Position (kb) 233 234 235 236Strain fitness (log2 ratio) -2 -1 0 1 2at 232.765 kb on + strand, within GFF4207at 232.766 kb on - strand, within GFF4207at 232.766 kb on - strand, within GFF4207at 232.766 kb on - strand, within GFF4207at 232.996 kb on + strand, within GFF4207at 233.017 kb on + strand, within GFF4207at 233.023 kb on + strand, within GFF4207at 233.116 kb on + strand, within GFF4207at 233.116 kb on + strand, within GFF4207at 233.116 kb on + strand, within GFF4207at 233.116 kb on + strand, within GFF4207at 233.219 kb on - strand, within GFF4207at 233.269 kb on + strand, within GFF4207at 233.269 kb on + strand, within GFF4207at 233.270 kb on - strand, within GFF4207at 233.270 kb on - strand, within GFF4207at 233.271 kb on + strand, within GFF4207at 233.584 kb on + strandat 233.585 kb on - strandat 233.585 kb on - strandat 233.585 kb on - strandat 233.712 kb on - strandat 233.712 kb on - strandat 233.732 kb on + strandat 233.733 kb on - strandat 233.765 kb on + strandat 233.856 kb on - strandat 233.856 kb on - strandat 233.969 kb on + strand, within GFF4208at 233.969 kb on + strand, within GFF4208at 233.969 kb on + strand, within GFF4208at 233.970 kb on - strand, within GFF4208at 233.979 kb on + strand, within GFF4208at 233.979 kb on + strand, within GFF4208at 234.014 kb on + strand, within GFF4208at 234.015 kb on - strand, within GFF4208at 234.015 kb on - strand, within GFF4208at 234.173 kb on + strand, within GFF4208at 234.174 kb on - strand, within GFF4208at 234.174 kb on - strand, within GFF4208at 234.174 kb on - strand, within GFF4208at 234.392 kb on + strand, within GFF4208at 234.428 kb on + strand, within GFF4208at 234.507 kb on - strand, within GFF4208at 234.507 kb on - strand, within GFF4208at 234.507 kb on - strand, within GFF4208at 234.507 kb on - strand, within GFF4208at 234.549 kb on - strand, within GFF4208at 234.560 kb on + strand, within GFF4208at 234.564 kb on - strand, within GFF4208at 234.728 kb on - strand, within GFF4208at 234.971 kb on + strand, within GFF4208at 234.999 kb on - strand, within GFF4208at 235.043 kb on + strand, within GFF4208at 235.043 kb on + strand, within GFF4208at 235.044 kb on - strand, within GFF4208at 235.044 kb on - strand, within GFF4208at 235.044 kb on - strand, within GFF4208at 235.097 kb on + strand, within GFF4208at 235.164 kb on - strand, within GFF4208at 235.164 kb on - strand, within GFF4208at 236.084 kb on + strandat 236.084 kb on + strandat 236.084 kb on + strandat 236.084 kb on + strandat 236.085 kb on - strandat 236.085 kb on - strandat 236.085 kb on - strandat 236.477 kb on + strand, within GFF4209at 236.477 kb on + strand, within GFF4209at 236.831 kb on + strand, within GFF4209at 236.831 kb on + strand, within GFF4209at 236.831 kb on + strand, within GFF4209at 236.831 kb on + strand, within GFF4209at 236.831 kb on + strand, within GFF4209at 236.832 kb on - strand, within GFF4209at 236.832 kb on - strand, within GFF4209at 236.832 kb on - strand, within GFF4209at 236.832 kb on - strand, within GFF4209at 236.861 kb on + strand, within GFF4209at 236.941 kb on - strand, within GFF4209at 236.942 kb on + strand, within GFF4209at 236.942 kb on + strand, within GFF4209at 236.942 kb on + strand, within GFF4209at 236.943 kb on - strand, within GFF4209

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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232,765 + GFF4207 0.25 -0.9
232,766 - GFF4207 0.25 -0.9
232,766 - GFF4207 0.25 -1.0
232,766 - GFF4207 0.25 -0.1
232,996 + GFF4207 0.44 -0.6
233,017 + GFF4207 0.46 -1.2
233,023 + GFF4207 0.46 -1.3
233,116 + GFF4207 0.54 +0.7
233,116 + GFF4207 0.54 +1.0
233,116 + GFF4207 0.54 -1.7
233,116 + GFF4207 0.54 -2.3
233,219 - GFF4207 0.62 -1.9
233,269 + GFF4207 0.67 +0.4
233,269 + GFF4207 0.67 +1.6
233,270 - GFF4207 0.67 +1.3
233,270 - GFF4207 0.67 +2.2
233,271 + GFF4207 0.67 +0.6
233,584 + +0.8
233,585 - -0.5
233,585 - -0.3
233,585 - +1.2
233,712 - +0.8
233,712 - -1.3
233,732 + -0.5
233,733 - -0.6
233,765 + +0.0
233,856 - -0.9
233,856 - +0.9
233,969 + GFF4208 0.12 +0.9
233,969 + GFF4208 0.12 +0.5
233,969 + GFF4208 0.12 -0.2
233,970 - GFF4208 0.12 +1.5
233,979 + GFF4208 0.13 -0.2
233,979 + GFF4208 0.13 -0.0
234,014 + GFF4208 0.14 -1.2
234,015 - GFF4208 0.14 +1.6
234,015 - GFF4208 0.14 -0.7
234,173 + GFF4208 0.21 +1.6
234,174 - GFF4208 0.21 -0.8
234,174 - GFF4208 0.21 +0.3
234,174 - GFF4208 0.21 -0.8
234,392 + GFF4208 0.31 -2.0
234,428 + GFF4208 0.32 -1.0
234,507 - GFF4208 0.36 +0.6
234,507 - GFF4208 0.36 -1.1
234,507 - GFF4208 0.36 +0.5
234,507 - GFF4208 0.36 -0.3
234,549 - GFF4208 0.38 -0.2
234,560 + GFF4208 0.38 +0.5
234,564 - GFF4208 0.38 -0.3
234,728 - GFF4208 0.46 -0.0
234,971 + GFF4208 0.56 -2.2
234,999 - GFF4208 0.57 -1.2
235,043 + GFF4208 0.59 -2.0
235,043 + GFF4208 0.59 +0.2
235,044 - GFF4208 0.59 +0.2
235,044 - GFF4208 0.59 -0.7
235,044 - GFF4208 0.59 -0.8
235,097 + GFF4208 0.62 +0.8
235,164 - GFF4208 0.65 -0.3
235,164 - GFF4208 0.65 -0.0
236,084 + +0.5
236,084 + -0.6
236,084 + +1.1
236,084 + -0.2
236,085 - +1.3
236,085 - +0.9
236,085 - -1.7
236,477 + GFF4209 0.25 +0.2
236,477 + GFF4209 0.25 -0.3
236,831 + GFF4209 0.56 +1.4
236,831 + GFF4209 0.56 -0.3
236,831 + GFF4209 0.56 +0.4
236,831 + GFF4209 0.56 +0.6
236,831 + GFF4209 0.56 -0.4
236,832 - GFF4209 0.56 -0.7
236,832 - GFF4209 0.56 -1.1
236,832 - GFF4209 0.56 -1.0
236,832 - GFF4209 0.56 +0.9
236,861 + GFF4209 0.59 +0.1
236,941 - GFF4209 0.66 -1.8
236,942 + GFF4209 0.66 -0.5
236,942 + GFF4209 0.66 -0.1
236,942 + GFF4209 0.66 -0.2
236,943 - GFF4209 0.66 +0.7

Or see this region's nucleotide sequence