Strain Fitness in Xanthobacter sp. DMC5 around GFF42

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF41 and GFF42 are separated by 77 nucleotidesGFF42 and GFF43 are separated by 14 nucleotidesGFF43 and GFF44 are separated by 117 nucleotides GFF41 - putative protein, at 50,064 to 51,110 GFF41 GFF42 - hypothetical protein, at 51,188 to 51,856 GFF42 GFF43 - Deaminated glutathione amidase, at 51,871 to 52,677 GFF43 GFF44 - HTH-type transcriptional regulator GltR, at 52,795 to 53,715 GFF44 Position (kb) 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 50.228 kb on - strand, within GFF41at 50.275 kb on + strand, within GFF41at 50.275 kb on + strand, within GFF41at 50.275 kb on + strand, within GFF41at 50.275 kb on + strand, within GFF41at 50.276 kb on - strand, within GFF41at 50.276 kb on - strand, within GFF41at 50.422 kb on + strand, within GFF41at 50.465 kb on - strand, within GFF41at 50.465 kb on - strand, within GFF41at 50.465 kb on - strand, within GFF41at 50.548 kb on + strand, within GFF41at 50.548 kb on + strand, within GFF41at 50.639 kb on - strand, within GFF41at 50.699 kb on - strand, within GFF41at 50.765 kb on - strand, within GFF41at 50.989 kb on + strand, within GFF41at 51.173 kb on - strandat 51.494 kb on + strand, within GFF42at 51.495 kb on - strand, within GFF42at 51.642 kb on + strand, within GFF42at 51.643 kb on - strand, within GFF42at 51.643 kb on - strand, within GFF42at 51.654 kb on + strand, within GFF42at 51.655 kb on - strand, within GFF42at 51.655 kb on - strand, within GFF42at 51.845 kb on - strandat 51.926 kb on + strandat 52.000 kb on + strand, within GFF43at 52.000 kb on + strand, within GFF43at 52.001 kb on - strand, within GFF43at 52.001 kb on - strand, within GFF43at 52.001 kb on - strand, within GFF43at 52.001 kb on - strand, within GFF43at 52.001 kb on - strand, within GFF43at 52.256 kb on + strand, within GFF43at 52.257 kb on - strand, within GFF43at 52.302 kb on - strand, within GFF43at 52.398 kb on - strand, within GFF43at 52.449 kb on + strand, within GFF43at 52.450 kb on - strand, within GFF43at 52.450 kb on - strand, within GFF43at 52.481 kb on + strand, within GFF43at 52.481 kb on + strand, within GFF43at 52.481 kb on + strand, within GFF43at 52.482 kb on - strand, within GFF43at 52.551 kb on - strand, within GFF43at 52.551 kb on - strand, within GFF43at 52.554 kb on - strand, within GFF43at 52.554 kb on - strand, within GFF43at 52.741 kb on + strandat 52.769 kb on - strandat 52.769 kb on - strandat 52.796 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
50,228 - GFF41 0.16 +1.4
50,275 + GFF41 0.20 +1.0
50,275 + GFF41 0.20 +0.4
50,275 + GFF41 0.20 -0.2
50,275 + GFF41 0.20 -0.2
50,276 - GFF41 0.20 -0.3
50,276 - GFF41 0.20 +0.3
50,422 + GFF41 0.34 +0.4
50,465 - GFF41 0.38 -2.1
50,465 - GFF41 0.38 -0.6
50,465 - GFF41 0.38 +0.9
50,548 + GFF41 0.46 -0.4
50,548 + GFF41 0.46 +0.5
50,639 - GFF41 0.55 +1.1
50,699 - GFF41 0.61 -0.5
50,765 - GFF41 0.67 +2.2
50,989 + GFF41 0.88 +0.3
51,173 - +0.3
51,494 + GFF42 0.46 +1.4
51,495 - GFF42 0.46 +0.3
51,642 + GFF42 0.68 +0.3
51,643 - GFF42 0.68 -1.1
51,643 - GFF42 0.68 +1.0
51,654 + GFF42 0.70 +0.2
51,655 - GFF42 0.70 +0.3
51,655 - GFF42 0.70 -1.0
51,845 - +0.0
51,926 + -0.8
52,000 + GFF43 0.16 +0.4
52,000 + GFF43 0.16 -1.0
52,001 - GFF43 0.16 +0.1
52,001 - GFF43 0.16 +0.7
52,001 - GFF43 0.16 -0.5
52,001 - GFF43 0.16 +0.2
52,001 - GFF43 0.16 +0.7
52,256 + GFF43 0.48 -0.8
52,257 - GFF43 0.48 +1.8
52,302 - GFF43 0.53 -0.2
52,398 - GFF43 0.65 -0.4
52,449 + GFF43 0.72 +0.3
52,450 - GFF43 0.72 +0.6
52,450 - GFF43 0.72 -0.6
52,481 + GFF43 0.76 +0.4
52,481 + GFF43 0.76 +0.5
52,481 + GFF43 0.76 -0.2
52,482 - GFF43 0.76 -0.8
52,551 - GFF43 0.84 -0.5
52,551 - GFF43 0.84 -0.5
52,554 - GFF43 0.85 -0.4
52,554 - GFF43 0.85 +0.1
52,741 + -0.4
52,769 - -1.4
52,769 - +0.1
52,796 + -0.2

Or see this region's nucleotide sequence