Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4196 and GFF4197 are separated by 118 nucleotides GFF4197 and GFF4198 are separated by 23 nucleotides GFF4198 and GFF4199 overlap by 4 nucleotides GFF4199 and GFF4200 are separated by 60 nucleotides
GFF4196 - hypothetical protein, at 216,658 to 217,881
GFF4196
GFF4197 - Muconolactone Delta-isomerase, at 218,000 to 218,275
GFF4197
GFF4198 - hypothetical protein, at 218,299 to 218,607
GFF4198
GFF4199 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 218,604 to 219,323
GFF4199
GFF4200 - hypothetical protein, at 219,384 to 220,418
GFF4200
Position (kb) 218
219 Strain fitness (log2 ratio) -2
-1
0
1 at 217.300 kb on + strand, within GFF4196 at 217.301 kb on - strand, within GFF4196 at 217.368 kb on + strand, within GFF4196 at 217.368 kb on + strand, within GFF4196 at 217.369 kb on - strand, within GFF4196 at 217.369 kb on - strand, within GFF4196 at 217.505 kb on - strand, within GFF4196 at 217.598 kb on - strand, within GFF4196 at 217.615 kb on + strand, within GFF4196 at 217.615 kb on + strand, within GFF4196 at 217.750 kb on + strand, within GFF4196 at 217.750 kb on + strand, within GFF4196 at 217.751 kb on - strand, within GFF4196 at 217.751 kb on - strand, within GFF4196 at 217.751 kb on - strand, within GFF4196 at 217.798 kb on + strand at 217.798 kb on + strand at 217.799 kb on - strand at 217.802 kb on - strand at 217.879 kb on + strand at 217.879 kb on + strand at 217.880 kb on - strand at 217.880 kb on - strand at 217.880 kb on - strand at 218.305 kb on + strand at 218.305 kb on + strand at 218.305 kb on + strand at 218.305 kb on + strand at 218.458 kb on + strand, within GFF4198 at 218.458 kb on + strand, within GFF4198 at 218.458 kb on + strand, within GFF4198 at 218.459 kb on - strand, within GFF4198 at 218.519 kb on - strand, within GFF4198 at 218.569 kb on + strand, within GFF4198 at 218.569 kb on + strand, within GFF4198 at 218.569 kb on + strand, within GFF4198 at 218.588 kb on - strand at 218.725 kb on + strand, within GFF4199 at 218.891 kb on - strand, within GFF4199 at 219.264 kb on - strand at 219.474 kb on - strand at 219.569 kb on - strand, within GFF4200 at 219.569 kb on - strand, within GFF4200
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 217,300 + GFF4196 0.52 +0.5 217,301 - GFF4196 0.53 -0.6 217,368 + GFF4196 0.58 +0.3 217,368 + GFF4196 0.58 -1.7 217,369 - GFF4196 0.58 -1.1 217,369 - GFF4196 0.58 +0.0 217,505 - GFF4196 0.69 +0.8 217,598 - GFF4196 0.77 -2.0 217,615 + GFF4196 0.78 +0.5 217,615 + GFF4196 0.78 -1.0 217,750 + GFF4196 0.89 +0.0 217,750 + GFF4196 0.89 +0.2 217,751 - GFF4196 0.89 -2.4 217,751 - GFF4196 0.89 -0.3 217,751 - GFF4196 0.89 -1.3 217,798 + -0.3 217,798 + -1.5 217,799 - -0.4 217,802 - +0.8 217,879 + +0.5 217,879 + -1.5 217,880 - -1.2 217,880 - -0.8 217,880 - +0.5 218,305 + +1.5 218,305 + +0.6 218,305 + -1.2 218,305 + +0.9 218,458 + GFF4198 0.51 -0.6 218,458 + GFF4198 0.51 -0.1 218,458 + GFF4198 0.51 -0.0 218,459 - GFF4198 0.52 +1.5 218,519 - GFF4198 0.71 -1.2 218,569 + GFF4198 0.87 -2.4 218,569 + GFF4198 0.87 +0.9 218,569 + GFF4198 0.87 -1.2 218,588 - +0.7 218,725 + GFF4199 0.17 -0.8 218,891 - GFF4199 0.40 +1.1 219,264 - -1.0 219,474 - -0.4 219,569 - GFF4200 0.18 -0.1 219,569 - GFF4200 0.18 +0.9
Or see this region's nucleotide sequence