Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4195 and GFF4196 are separated by 351 nucleotides GFF4196 and GFF4197 are separated by 118 nucleotides GFF4197 and GFF4198 are separated by 23 nucleotides GFF4198 and GFF4199 overlap by 4 nucleotides
GFF4195 - L-carnitine dehydrogenase, at 215,290 to 216,306
GFF4195
GFF4196 - hypothetical protein, at 216,658 to 217,881
GFF4196
GFF4197 - Muconolactone Delta-isomerase, at 218,000 to 218,275
GFF4197
GFF4198 - hypothetical protein, at 218,299 to 218,607
GFF4198
GFF4199 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 218,604 to 219,323
GFF4199
Position (kb) 216
217
218 Strain fitness (log2 ratio) -2
-1
0
1 at 215.693 kb on + strand, within GFF4195 at 215.694 kb on - strand, within GFF4195 at 215.984 kb on + strand, within GFF4195 at 216.075 kb on + strand, within GFF4195 at 216.076 kb on - strand, within GFF4195 at 216.184 kb on + strand, within GFF4195 at 216.184 kb on + strand, within GFF4195 at 216.307 kb on - strand at 216.392 kb on + strand at 216.740 kb on - strand at 216.791 kb on - strand, within GFF4196 at 216.940 kb on + strand, within GFF4196 at 216.940 kb on + strand, within GFF4196 at 216.941 kb on - strand, within GFF4196 at 217.105 kb on + strand, within GFF4196 at 217.105 kb on + strand, within GFF4196 at 217.105 kb on + strand, within GFF4196 at 217.105 kb on + strand, within GFF4196 at 217.105 kb on + strand, within GFF4196 at 217.106 kb on - strand, within GFF4196 at 217.172 kb on - strand, within GFF4196 at 217.172 kb on - strand, within GFF4196 at 217.172 kb on - strand, within GFF4196 at 217.300 kb on + strand, within GFF4196 at 217.301 kb on - strand, within GFF4196 at 217.368 kb on + strand, within GFF4196 at 217.368 kb on + strand, within GFF4196 at 217.369 kb on - strand, within GFF4196 at 217.369 kb on - strand, within GFF4196 at 217.505 kb on - strand, within GFF4196 at 217.598 kb on - strand, within GFF4196 at 217.615 kb on + strand, within GFF4196 at 217.615 kb on + strand, within GFF4196 at 217.750 kb on + strand, within GFF4196 at 217.750 kb on + strand, within GFF4196 at 217.751 kb on - strand, within GFF4196 at 217.751 kb on - strand, within GFF4196 at 217.751 kb on - strand, within GFF4196 at 217.798 kb on + strand at 217.798 kb on + strand at 217.799 kb on - strand at 217.802 kb on - strand at 217.879 kb on + strand at 217.879 kb on + strand at 217.880 kb on - strand at 217.880 kb on - strand at 217.880 kb on - strand at 218.305 kb on + strand at 218.305 kb on + strand at 218.305 kb on + strand at 218.305 kb on + strand at 218.458 kb on + strand, within GFF4198 at 218.458 kb on + strand, within GFF4198 at 218.458 kb on + strand, within GFF4198 at 218.459 kb on - strand, within GFF4198 at 218.519 kb on - strand, within GFF4198 at 218.569 kb on + strand, within GFF4198 at 218.569 kb on + strand, within GFF4198 at 218.569 kb on + strand, within GFF4198 at 218.588 kb on - strand at 218.725 kb on + strand, within GFF4199
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 215,693 + GFF4195 0.40 -0.1 215,694 - GFF4195 0.40 -0.4 215,984 + GFF4195 0.68 +0.4 216,075 + GFF4195 0.77 +0.3 216,076 - GFF4195 0.77 -0.4 216,184 + GFF4195 0.88 +0.9 216,184 + GFF4195 0.88 +0.1 216,307 - -0.5 216,392 + +0.9 216,740 - -0.6 216,791 - GFF4196 0.11 -0.0 216,940 + GFF4196 0.23 -0.3 216,940 + GFF4196 0.23 -0.6 216,941 - GFF4196 0.23 -2.2 217,105 + GFF4196 0.37 +0.2 217,105 + GFF4196 0.37 -0.7 217,105 + GFF4196 0.37 -1.6 217,105 + GFF4196 0.37 -1.0 217,105 + GFF4196 0.37 -0.4 217,106 - GFF4196 0.37 -0.3 217,172 - GFF4196 0.42 -0.4 217,172 - GFF4196 0.42 +1.2 217,172 - GFF4196 0.42 -0.6 217,300 + GFF4196 0.52 +0.5 217,301 - GFF4196 0.53 -0.6 217,368 + GFF4196 0.58 +0.3 217,368 + GFF4196 0.58 -1.7 217,369 - GFF4196 0.58 -1.1 217,369 - GFF4196 0.58 +0.0 217,505 - GFF4196 0.69 +0.8 217,598 - GFF4196 0.77 -2.0 217,615 + GFF4196 0.78 +0.5 217,615 + GFF4196 0.78 -1.0 217,750 + GFF4196 0.89 +0.0 217,750 + GFF4196 0.89 +0.2 217,751 - GFF4196 0.89 -2.4 217,751 - GFF4196 0.89 -0.3 217,751 - GFF4196 0.89 -1.3 217,798 + -0.3 217,798 + -1.5 217,799 - -0.4 217,802 - +0.8 217,879 + +0.5 217,879 + -1.5 217,880 - -1.2 217,880 - -0.8 217,880 - +0.5 218,305 + +1.5 218,305 + +0.6 218,305 + -1.2 218,305 + +0.9 218,458 + GFF4198 0.51 -0.6 218,458 + GFF4198 0.51 -0.1 218,458 + GFF4198 0.51 -0.0 218,459 - GFF4198 0.52 +1.5 218,519 - GFF4198 0.71 -1.2 218,569 + GFF4198 0.87 -2.4 218,569 + GFF4198 0.87 +0.9 218,569 + GFF4198 0.87 -1.2 218,588 - +0.7 218,725 + GFF4199 0.17 -0.8
Or see this region's nucleotide sequence