Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4193 and GFF4194 are separated by 30 nucleotides GFF4194 and GFF4195 overlap by 4 nucleotides
GFF4193 - hypothetical protein, at 213,386 to 214,465
GFF4193
GFF4194 - Pca regulon regulatory protein, at 214,496 to 215,293
GFF4194
GFF4195 - L-carnitine dehydrogenase, at 215,290 to 216,306
GFF4195
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 213.641 kb on + strand, within GFF4193 at 213.641 kb on + strand, within GFF4193 at 213.642 kb on - strand, within GFF4193 at 213.653 kb on + strand, within GFF4193 at 213.654 kb on - strand, within GFF4193 at 213.751 kb on + strand, within GFF4193 at 213.752 kb on - strand, within GFF4193 at 213.752 kb on - strand, within GFF4193 at 213.755 kb on + strand, within GFF4193 at 213.756 kb on - strand, within GFF4193 at 213.756 kb on - strand, within GFF4193 at 213.756 kb on - strand, within GFF4193 at 213.756 kb on - strand, within GFF4193 at 213.756 kb on - strand, within GFF4193 at 213.756 kb on - strand, within GFF4193 at 213.756 kb on - strand, within GFF4193 at 214.029 kb on + strand, within GFF4193 at 214.029 kb on + strand, within GFF4193 at 214.030 kb on - strand, within GFF4193 at 214.205 kb on + strand, within GFF4193 at 214.205 kb on + strand, within GFF4193 at 214.206 kb on - strand, within GFF4193 at 214.206 kb on - strand, within GFF4193 at 214.206 kb on - strand, within GFF4193 at 214.394 kb on + strand at 214.395 kb on - strand at 214.613 kb on + strand, within GFF4194 at 214.613 kb on + strand, within GFF4194 at 214.785 kb on + strand, within GFF4194 at 214.785 kb on + strand, within GFF4194 at 214.785 kb on + strand, within GFF4194 at 214.785 kb on + strand, within GFF4194 at 214.785 kb on + strand, within GFF4194 at 214.913 kb on + strand, within GFF4194 at 214.914 kb on - strand, within GFF4194 at 214.914 kb on - strand, within GFF4194 at 214.914 kb on - strand, within GFF4194 at 214.914 kb on - strand, within GFF4194 at 214.917 kb on + strand, within GFF4194 at 214.918 kb on - strand, within GFF4194 at 214.918 kb on - strand, within GFF4194 at 214.918 kb on - strand, within GFF4194 at 214.918 kb on - strand, within GFF4194 at 215.028 kb on + strand, within GFF4194 at 215.028 kb on + strand, within GFF4194 at 215.028 kb on + strand, within GFF4194 at 215.029 kb on - strand, within GFF4194 at 215.029 kb on - strand, within GFF4194 at 215.029 kb on - strand, within GFF4194 at 215.029 kb on - strand, within GFF4194 at 215.092 kb on - strand, within GFF4194 at 215.187 kb on + strand, within GFF4194 at 215.188 kb on - strand, within GFF4194 at 215.188 kb on - strand, within GFF4194 at 215.222 kb on + strand at 215.222 kb on + strand at 215.238 kb on + strand at 215.238 kb on + strand at 215.239 kb on - strand at 215.239 kb on - strand at 215.340 kb on + strand at 215.340 kb on + strand at 215.341 kb on - strand at 215.342 kb on + strand at 215.342 kb on + strand at 215.579 kb on + strand, within GFF4195 at 215.579 kb on + strand, within GFF4195 at 215.693 kb on + strand, within GFF4195 at 215.694 kb on - strand, within GFF4195 at 215.984 kb on + strand, within GFF4195 at 216.075 kb on + strand, within GFF4195 at 216.076 kb on - strand, within GFF4195 at 216.184 kb on + strand, within GFF4195 at 216.184 kb on + strand, within GFF4195
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 213,641 + GFF4193 0.24 -1.0 213,641 + GFF4193 0.24 -0.4 213,642 - GFF4193 0.24 -0.1 213,653 + GFF4193 0.25 -0.8 213,654 - GFF4193 0.25 -0.6 213,751 + GFF4193 0.34 -0.1 213,752 - GFF4193 0.34 +1.3 213,752 - GFF4193 0.34 -0.3 213,755 + GFF4193 0.34 +0.0 213,756 - GFF4193 0.34 +0.2 213,756 - GFF4193 0.34 +0.2 213,756 - GFF4193 0.34 -0.7 213,756 - GFF4193 0.34 -0.2 213,756 - GFF4193 0.34 -1.3 213,756 - GFF4193 0.34 +0.0 213,756 - GFF4193 0.34 -0.8 214,029 + GFF4193 0.60 +0.2 214,029 + GFF4193 0.60 +0.5 214,030 - GFF4193 0.60 -1.4 214,205 + GFF4193 0.76 +0.6 214,205 + GFF4193 0.76 +1.2 214,206 - GFF4193 0.76 +1.6 214,206 - GFF4193 0.76 -0.6 214,206 - GFF4193 0.76 +0.0 214,394 + +0.6 214,395 - +0.3 214,613 + GFF4194 0.15 +1.1 214,613 + GFF4194 0.15 +0.5 214,785 + GFF4194 0.36 -0.6 214,785 + GFF4194 0.36 -0.1 214,785 + GFF4194 0.36 +0.8 214,785 + GFF4194 0.36 +0.8 214,785 + GFF4194 0.36 +0.2 214,913 + GFF4194 0.52 -1.1 214,914 - GFF4194 0.52 +1.4 214,914 - GFF4194 0.52 -0.3 214,914 - GFF4194 0.52 -0.1 214,914 - GFF4194 0.52 +0.6 214,917 + GFF4194 0.53 -0.1 214,918 - GFF4194 0.53 +0.4 214,918 - GFF4194 0.53 +0.2 214,918 - GFF4194 0.53 +0.6 214,918 - GFF4194 0.53 -0.1 215,028 + GFF4194 0.67 +0.8 215,028 + GFF4194 0.67 +0.6 215,028 + GFF4194 0.67 +1.3 215,029 - GFF4194 0.67 +1.0 215,029 - GFF4194 0.67 -2.0 215,029 - GFF4194 0.67 +0.2 215,029 - GFF4194 0.67 +0.8 215,092 - GFF4194 0.75 -1.5 215,187 + GFF4194 0.87 +1.0 215,188 - GFF4194 0.87 +0.8 215,188 - GFF4194 0.87 +1.1 215,222 + +1.0 215,222 + +1.7 215,238 + +0.2 215,238 + +0.8 215,239 - +1.1 215,239 - -0.1 215,340 + +0.4 215,340 + +1.7 215,341 - +0.5 215,342 + +2.9 215,342 + +1.0 215,579 + GFF4195 0.28 -0.4 215,579 + GFF4195 0.28 +0.9 215,693 + GFF4195 0.40 -0.1 215,694 - GFF4195 0.40 -0.4 215,984 + GFF4195 0.68 +0.4 216,075 + GFF4195 0.77 +0.3 216,076 - GFF4195 0.77 -0.4 216,184 + GFF4195 0.88 +0.9 216,184 + GFF4195 0.88 +0.1
Or see this region's nucleotide sequence