Strain Fitness in Xanthobacter sp. DMC5 around GFF4193

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4192 and GFF4193 are separated by 271 nucleotidesGFF4193 and GFF4194 are separated by 30 nucleotidesGFF4194 and GFF4195 overlap by 4 nucleotides GFF4192 - Aminomethyltransferase, at 211,975 to 213,114 GFF4192 GFF4193 - hypothetical protein, at 213,386 to 214,465 GFF4193 GFF4194 - Pca regulon regulatory protein, at 214,496 to 215,293 GFF4194 GFF4195 - L-carnitine dehydrogenase, at 215,290 to 216,306 GFF4195 Position (kb) 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2 3at 212.494 kb on + strand, within GFF4192at 212.557 kb on + strand, within GFF4192at 212.573 kb on - strand, within GFF4192at 212.713 kb on + strand, within GFF4192at 212.714 kb on - strand, within GFF4192at 212.935 kb on + strand, within GFF4192at 212.935 kb on + strand, within GFF4192at 212.935 kb on + strand, within GFF4192at 212.975 kb on + strand, within GFF4192at 212.975 kb on + strand, within GFF4192at 212.976 kb on - strand, within GFF4192at 212.976 kb on - strand, within GFF4192at 212.976 kb on - strand, within GFF4192at 212.976 kb on - strand, within GFF4192at 213.064 kb on + strandat 213.064 kb on + strandat 213.064 kb on + strandat 213.106 kb on - strandat 213.106 kb on - strandat 213.266 kb on - strandat 213.334 kb on - strandat 213.641 kb on + strand, within GFF4193at 213.641 kb on + strand, within GFF4193at 213.642 kb on - strand, within GFF4193at 213.653 kb on + strand, within GFF4193at 213.654 kb on - strand, within GFF4193at 213.751 kb on + strand, within GFF4193at 213.752 kb on - strand, within GFF4193at 213.752 kb on - strand, within GFF4193at 213.755 kb on + strand, within GFF4193at 213.756 kb on - strand, within GFF4193at 213.756 kb on - strand, within GFF4193at 213.756 kb on - strand, within GFF4193at 213.756 kb on - strand, within GFF4193at 213.756 kb on - strand, within GFF4193at 213.756 kb on - strand, within GFF4193at 213.756 kb on - strand, within GFF4193at 214.029 kb on + strand, within GFF4193at 214.029 kb on + strand, within GFF4193at 214.030 kb on - strand, within GFF4193at 214.205 kb on + strand, within GFF4193at 214.205 kb on + strand, within GFF4193at 214.206 kb on - strand, within GFF4193at 214.206 kb on - strand, within GFF4193at 214.206 kb on - strand, within GFF4193at 214.394 kb on + strandat 214.395 kb on - strandat 214.613 kb on + strand, within GFF4194at 214.613 kb on + strand, within GFF4194at 214.785 kb on + strand, within GFF4194at 214.785 kb on + strand, within GFF4194at 214.785 kb on + strand, within GFF4194at 214.785 kb on + strand, within GFF4194at 214.785 kb on + strand, within GFF4194at 214.913 kb on + strand, within GFF4194at 214.914 kb on - strand, within GFF4194at 214.914 kb on - strand, within GFF4194at 214.914 kb on - strand, within GFF4194at 214.914 kb on - strand, within GFF4194at 214.917 kb on + strand, within GFF4194at 214.918 kb on - strand, within GFF4194at 214.918 kb on - strand, within GFF4194at 214.918 kb on - strand, within GFF4194at 214.918 kb on - strand, within GFF4194at 215.028 kb on + strand, within GFF4194at 215.028 kb on + strand, within GFF4194at 215.028 kb on + strand, within GFF4194at 215.029 kb on - strand, within GFF4194at 215.029 kb on - strand, within GFF4194at 215.029 kb on - strand, within GFF4194at 215.029 kb on - strand, within GFF4194at 215.092 kb on - strand, within GFF4194at 215.187 kb on + strand, within GFF4194at 215.188 kb on - strand, within GFF4194at 215.188 kb on - strand, within GFF4194at 215.222 kb on + strandat 215.222 kb on + strandat 215.238 kb on + strandat 215.238 kb on + strandat 215.239 kb on - strandat 215.239 kb on - strandat 215.340 kb on + strandat 215.340 kb on + strandat 215.341 kb on - strandat 215.342 kb on + strandat 215.342 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
212,494 + GFF4192 0.46 +0.4
212,557 + GFF4192 0.51 +0.2
212,573 - GFF4192 0.52 +0.4
212,713 + GFF4192 0.65 +1.8
212,714 - GFF4192 0.65 -0.9
212,935 + GFF4192 0.84 -1.6
212,935 + GFF4192 0.84 +0.9
212,935 + GFF4192 0.84 +0.3
212,975 + GFF4192 0.88 -0.1
212,975 + GFF4192 0.88 +0.1
212,976 - GFF4192 0.88 +0.5
212,976 - GFF4192 0.88 +0.0
212,976 - GFF4192 0.88 +0.4
212,976 - GFF4192 0.88 +1.1
213,064 + -0.3
213,064 + -1.2
213,064 + -0.2
213,106 - +2.0
213,106 - -0.8
213,266 - -0.5
213,334 - -0.2
213,641 + GFF4193 0.24 -1.0
213,641 + GFF4193 0.24 -0.4
213,642 - GFF4193 0.24 -0.1
213,653 + GFF4193 0.25 -0.8
213,654 - GFF4193 0.25 -0.6
213,751 + GFF4193 0.34 -0.1
213,752 - GFF4193 0.34 +1.3
213,752 - GFF4193 0.34 -0.3
213,755 + GFF4193 0.34 +0.0
213,756 - GFF4193 0.34 +0.2
213,756 - GFF4193 0.34 +0.2
213,756 - GFF4193 0.34 -0.7
213,756 - GFF4193 0.34 -0.2
213,756 - GFF4193 0.34 -1.3
213,756 - GFF4193 0.34 +0.0
213,756 - GFF4193 0.34 -0.8
214,029 + GFF4193 0.60 +0.2
214,029 + GFF4193 0.60 +0.5
214,030 - GFF4193 0.60 -1.4
214,205 + GFF4193 0.76 +0.6
214,205 + GFF4193 0.76 +1.2
214,206 - GFF4193 0.76 +1.6
214,206 - GFF4193 0.76 -0.6
214,206 - GFF4193 0.76 +0.0
214,394 + +0.6
214,395 - +0.3
214,613 + GFF4194 0.15 +1.1
214,613 + GFF4194 0.15 +0.5
214,785 + GFF4194 0.36 -0.6
214,785 + GFF4194 0.36 -0.1
214,785 + GFF4194 0.36 +0.8
214,785 + GFF4194 0.36 +0.8
214,785 + GFF4194 0.36 +0.2
214,913 + GFF4194 0.52 -1.1
214,914 - GFF4194 0.52 +1.4
214,914 - GFF4194 0.52 -0.3
214,914 - GFF4194 0.52 -0.1
214,914 - GFF4194 0.52 +0.6
214,917 + GFF4194 0.53 -0.1
214,918 - GFF4194 0.53 +0.4
214,918 - GFF4194 0.53 +0.2
214,918 - GFF4194 0.53 +0.6
214,918 - GFF4194 0.53 -0.1
215,028 + GFF4194 0.67 +0.8
215,028 + GFF4194 0.67 +0.6
215,028 + GFF4194 0.67 +1.3
215,029 - GFF4194 0.67 +1.0
215,029 - GFF4194 0.67 -2.0
215,029 - GFF4194 0.67 +0.2
215,029 - GFF4194 0.67 +0.8
215,092 - GFF4194 0.75 -1.5
215,187 + GFF4194 0.87 +1.0
215,188 - GFF4194 0.87 +0.8
215,188 - GFF4194 0.87 +1.1
215,222 + +1.0
215,222 + +1.7
215,238 + +0.2
215,238 + +0.8
215,239 - +1.1
215,239 - -0.1
215,340 + +0.4
215,340 + +1.7
215,341 - +0.5
215,342 + +2.9
215,342 + +1.0

Or see this region's nucleotide sequence