Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4183 and GFF4184 are separated by 61 nucleotides GFF4184 and GFF4185 are separated by 203 nucleotides GFF4185 and GFF4186 are separated by 425 nucleotides
GFF4183 - hypothetical protein, at 198,828 to 200,210
GFF4183
GFF4184 - hypothetical protein, at 200,272 to 200,592
GFF4184
GFF4185 - putative protein, at 200,796 to 201,932
GFF4185
GFF4186 - Trimethylamine dehydrogenase, at 202,358 to 204,565
GFF4186
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.842 kb on + strand, within GFF4183 at 199.860 kb on - strand, within GFF4183 at 200.734 kb on - strand at 200.767 kb on - strand at 200.828 kb on + strand at 200.829 kb on - strand at 200.917 kb on - strand, within GFF4185 at 200.931 kb on + strand, within GFF4185 at 200.932 kb on - strand, within GFF4185 at 200.934 kb on - strand, within GFF4185 at 201.036 kb on + strand, within GFF4185 at 201.225 kb on + strand, within GFF4185 at 201.226 kb on - strand, within GFF4185 at 201.226 kb on - strand, within GFF4185 at 201.226 kb on - strand, within GFF4185 at 201.402 kb on + strand, within GFF4185 at 201.402 kb on + strand, within GFF4185 at 201.402 kb on + strand, within GFF4185 at 201.402 kb on + strand, within GFF4185 at 201.402 kb on + strand, within GFF4185 at 201.403 kb on - strand, within GFF4185 at 201.403 kb on - strand, within GFF4185 at 201.403 kb on - strand, within GFF4185 at 201.403 kb on - strand, within GFF4185 at 201.403 kb on - strand, within GFF4185 at 201.433 kb on + strand, within GFF4185 at 201.434 kb on - strand, within GFF4185 at 201.434 kb on - strand, within GFF4185 at 201.616 kb on + strand, within GFF4185 at 201.617 kb on - strand, within GFF4185 at 201.762 kb on + strand, within GFF4185 at 201.762 kb on + strand, within GFF4185 at 201.762 kb on + strand, within GFF4185 at 201.763 kb on - strand, within GFF4185 at 201.898 kb on - strand at 201.898 kb on - strand at 201.898 kb on - strand at 201.898 kb on - strand at 201.898 kb on - strand at 201.903 kb on + strand at 201.903 kb on + strand at 201.904 kb on - strand at 201.905 kb on + strand at 201.976 kb on - strand at 202.196 kb on - strand at 202.340 kb on + strand at 202.344 kb on + strand at 202.388 kb on + strand at 202.389 kb on - strand at 202.389 kb on - strand at 202.389 kb on - strand at 202.445 kb on + strand at 202.446 kb on - strand at 202.446 kb on - strand at 202.550 kb on + strand at 202.658 kb on + strand, within GFF4186 at 202.659 kb on - strand, within GFF4186 at 202.748 kb on + strand, within GFF4186 at 202.748 kb on + strand, within GFF4186 at 202.748 kb on + strand, within GFF4186 at 202.748 kb on + strand, within GFF4186 at 202.749 kb on - strand, within GFF4186 at 202.775 kb on + strand, within GFF4186 at 202.776 kb on - strand, within GFF4186 at 202.776 kb on - strand, within GFF4186 at 202.776 kb on - strand, within GFF4186 at 202.776 kb on - strand, within GFF4186 at 202.823 kb on + strand, within GFF4186 at 202.824 kb on - strand, within GFF4186 at 202.872 kb on - strand, within GFF4186 at 202.872 kb on - strand, within GFF4186 at 202.893 kb on - strand, within GFF4186 at 202.922 kb on + strand, within GFF4186
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 199,842 + GFF4183 0.73 +1.1 199,860 - GFF4183 0.75 +1.6 200,734 - -1.0 200,767 - -2.0 200,828 + -1.5 200,829 - -0.3 200,917 - GFF4185 0.11 -0.5 200,931 + GFF4185 0.12 -0.1 200,932 - GFF4185 0.12 +0.0 200,934 - GFF4185 0.12 +0.8 201,036 + GFF4185 0.21 -2.2 201,225 + GFF4185 0.38 -0.1 201,226 - GFF4185 0.38 +0.0 201,226 - GFF4185 0.38 -2.4 201,226 - GFF4185 0.38 +0.4 201,402 + GFF4185 0.53 -1.0 201,402 + GFF4185 0.53 -0.1 201,402 + GFF4185 0.53 -0.2 201,402 + GFF4185 0.53 +0.9 201,402 + GFF4185 0.53 +0.6 201,403 - GFF4185 0.53 +0.6 201,403 - GFF4185 0.53 -0.2 201,403 - GFF4185 0.53 -0.3 201,403 - GFF4185 0.53 +0.0 201,403 - GFF4185 0.53 -0.9 201,433 + GFF4185 0.56 +0.9 201,434 - GFF4185 0.56 +0.0 201,434 - GFF4185 0.56 -1.0 201,616 + GFF4185 0.72 -1.6 201,617 - GFF4185 0.72 +0.1 201,762 + GFF4185 0.85 +0.5 201,762 + GFF4185 0.85 -0.1 201,762 + GFF4185 0.85 -0.9 201,763 - GFF4185 0.85 -0.6 201,898 - -0.1 201,898 - -0.7 201,898 - +0.2 201,898 - -0.1 201,898 - -1.0 201,903 + -0.1 201,903 + +0.1 201,904 - -1.3 201,905 + +0.8 201,976 - +0.6 202,196 - +0.3 202,340 + -0.4 202,344 + +0.3 202,388 + -0.5 202,389 - -1.0 202,389 - -0.0 202,389 - -1.1 202,445 + -0.7 202,446 - +0.1 202,446 - -0.1 202,550 + +0.4 202,658 + GFF4186 0.14 +2.2 202,659 - GFF4186 0.14 -0.1 202,748 + GFF4186 0.18 -0.5 202,748 + GFF4186 0.18 +0.4 202,748 + GFF4186 0.18 +0.5 202,748 + GFF4186 0.18 -0.5 202,749 - GFF4186 0.18 -0.1 202,775 + GFF4186 0.19 +0.2 202,776 - GFF4186 0.19 +0.4 202,776 - GFF4186 0.19 +0.3 202,776 - GFF4186 0.19 +1.5 202,776 - GFF4186 0.19 +0.5 202,823 + GFF4186 0.21 -0.6 202,824 - GFF4186 0.21 -1.0 202,872 - GFF4186 0.23 +0.4 202,872 - GFF4186 0.23 +1.0 202,893 - GFF4186 0.24 +0.3 202,922 + GFF4186 0.26 -1.8
Or see this region's nucleotide sequence