Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4156 and GFF4157 are separated by 187 nucleotides GFF4157 and GFF4158 are separated by 265 nucleotides GFF4158 and GFF4159 are separated by 87 nucleotides
GFF4156 - Glyoxylate/hydroxypyruvate reductase B, at 169,277 to 170,263
GFF4156
GFF4157 - Small heat shock protein IbpA, at 170,451 to 170,936
GFF4157
GFF4158 - hypothetical protein, at 171,202 to 171,714
GFF4158
GFF4159 - Lysophospholipase L2, at 171,802 to 172,743
GFF4159
Position (kb) 170
171 Strain fitness (log2 ratio) -1
0
1
2 at 169.692 kb on + strand, within GFF4156 at 169.693 kb on - strand, within GFF4156 at 170.007 kb on + strand, within GFF4156 at 170.203 kb on - strand at 170.794 kb on + strand, within GFF4157 at 170.824 kb on + strand, within GFF4157 at 170.824 kb on + strand, within GFF4157 at 170.825 kb on - strand, within GFF4157 at 170.825 kb on - strand, within GFF4157 at 170.930 kb on + strand at 170.930 kb on + strand at 170.930 kb on + strand at 170.941 kb on + strand at 170.941 kb on + strand at 170.942 kb on - strand at 170.942 kb on - strand at 170.942 kb on - strand at 170.974 kb on + strand at 170.975 kb on - strand at 171.494 kb on - strand, within GFF4158 at 171.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 169,692 + GFF4156 0.42 +0.3 169,693 - GFF4156 0.42 +0.6 170,007 + GFF4156 0.74 -1.5 170,203 - +1.0 170,794 + GFF4157 0.71 +1.0 170,824 + GFF4157 0.77 +0.4 170,824 + GFF4157 0.77 -0.1 170,825 - GFF4157 0.77 -0.7 170,825 - GFF4157 0.77 +0.1 170,930 + +0.5 170,930 + -0.1 170,930 + -1.0 170,941 + -0.3 170,941 + -1.6 170,942 - +0.0 170,942 - +1.9 170,942 - +0.6 170,974 + +1.4 170,975 - -0.5 171,494 - GFF4158 0.57 +0.5 171,811 + -0.8
Or see this region's nucleotide sequence