Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4148 and GFF4149 are separated by 237 nucleotides GFF4149 and GFF4150 are separated by 187 nucleotides GFF4150 and GFF4151 are separated by 123 nucleotides
GFF4148 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 159,251 to 160,270
GFF4148
GFF4149 - hypothetical protein, at 160,508 to 161,695
GFF4149
GFF4150 - hypothetical protein, at 161,883 to 162,464
GFF4150
GFF4151 - Nickel and cobalt resistance protein CnrA, at 162,588 to 165,737
GFF4151
Position (kb) 160
161
162 Strain fitness (log2 ratio) -1
0
1 at 159.561 kb on + strand, within GFF4148 at 159.562 kb on - strand, within GFF4148 at 159.622 kb on - strand, within GFF4148 at 159.622 kb on - strand, within GFF4148 at 159.895 kb on - strand, within GFF4148 at 160.196 kb on - strand at 160.317 kb on + strand at 160.318 kb on - strand at 160.351 kb on + strand at 162.048 kb on + strand, within GFF4150 at 162.048 kb on + strand, within GFF4150 at 162.049 kb on - strand, within GFF4150 at 162.130 kb on - strand, within GFF4150 at 162.153 kb on + strand, within GFF4150 at 162.153 kb on + strand, within GFF4150 at 162.154 kb on - strand, within GFF4150 at 162.180 kb on + strand, within GFF4150 at 162.181 kb on - strand, within GFF4150 at 162.308 kb on - strand, within GFF4150 at 162.373 kb on - strand, within GFF4150 at 162.662 kb on - strand at 162.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 159,561 + GFF4148 0.30 +0.5 159,562 - GFF4148 0.30 +1.2 159,622 - GFF4148 0.36 +0.0 159,622 - GFF4148 0.36 +0.0 159,895 - GFF4148 0.63 +0.0 160,196 - -1.2 160,317 + +0.6 160,318 - +0.9 160,351 + -0.6 162,048 + GFF4150 0.28 +1.4 162,048 + GFF4150 0.28 -0.6 162,049 - GFF4150 0.29 +0.1 162,130 - GFF4150 0.42 -1.5 162,153 + GFF4150 0.46 +1.0 162,153 + GFF4150 0.46 +0.5 162,154 - GFF4150 0.47 +1.0 162,180 + GFF4150 0.51 -0.2 162,181 - GFF4150 0.51 -0.8 162,308 - GFF4150 0.73 -1.5 162,373 - GFF4150 0.84 -0.4 162,662 - -0.0 162,662 - +0.4
Or see this region's nucleotide sequence