Strain Fitness in Xanthobacter sp. DMC5 around GFF4147

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4146 and GFF4147 are separated by 88 nucleotidesGFF4147 and GFF4148 overlap by 1 nucleotides GFF4146 - Methionine synthase, at 154,466 to 158,221 GFF4146 GFF4147 - 5,10-methylenetetrahydrofolate reductase, at 158,310 to 159,251 GFF4147 GFF4148 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 159,251 to 160,270 GFF4148 Position (kb) 158 159 160Strain fitness (log2 ratio) -1 0 1at 159.561 kb on + strand, within GFF4148at 159.562 kb on - strand, within GFF4148at 159.622 kb on - strand, within GFF4148at 159.622 kb on - strand, within GFF4148at 159.895 kb on - strand, within GFF4148at 160.196 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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159,561 + GFF4148 0.30 +0.5
159,562 - GFF4148 0.30 +1.2
159,622 - GFF4148 0.36 +0.0
159,622 - GFF4148 0.36 +0.0
159,895 - GFF4148 0.63 +0.0
160,196 - -1.2

Or see this region's nucleotide sequence