Strain Fitness in Xanthobacter sp. DMC5 around GFF4142

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4141 and GFF4142 overlap by 4 nucleotidesGFF4142 and GFF4143 are separated by 98 nucleotides GFF4141 - hypothetical protein, at 147,777 to 148,874 GFF4141 GFF4142 - LPS-assembly protein LptD, at 148,871 to 151,411 GFF4142 GFF4143 - Chaperone SurA, at 151,510 to 152,418 GFF4143 Position (kb) 148 149 150 151 152Strain fitness (log2 ratio) -1 0 1at 151.434 kb on + strandat 151.435 kb on - strandat 151.520 kb on + strandat 151.520 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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151,434 + +0.8
151,435 - +0.9
151,520 + +0.4
151,520 + +0.3

Or see this region's nucleotide sequence