Strain Fitness in Xanthobacter sp. DMC5 around GFF4138

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4137 and GFF4138 are separated by 521 nucleotidesGFF4138 and GFF4139 overlap by 11 nucleotides GFF4137 - Transcriptional regulatory protein ros, at 142,838 to 143,251 GFF4137 GFF4138 - Peptide methionine sulfoxide reductase MsrB, at 143,773 to 144,216 GFF4138 GFF4139 - Dipeptidyl aminopeptidase BI, at 144,206 to 146,302 GFF4139 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1 2at 142.779 kb on + strandat 142.828 kb on + strandat 142.828 kb on + strandat 142.829 kb on - strandat 142.902 kb on + strand, within GFF4137at 142.975 kb on - strand, within GFF4137at 143.190 kb on + strand, within GFF4137at 143.190 kb on + strand, within GFF4137at 143.191 kb on - strand, within GFF4137at 143.191 kb on - strand, within GFF4137at 143.191 kb on - strand, within GFF4137at 143.204 kb on - strand, within GFF4137at 143.469 kb on + strandat 143.487 kb on + strandat 143.487 kb on + strandat 143.487 kb on + strandat 143.488 kb on - strandat 143.488 kb on - strandat 143.488 kb on - strandat 143.534 kb on - strandat 143.534 kb on - strandat 143.535 kb on + strandat 143.535 kb on + strandat 143.536 kb on - strandat 143.586 kb on + strandat 143.586 kb on + strandat 143.741 kb on - strandat 143.741 kb on - strandat 143.741 kb on - strandat 143.741 kb on - strandat 143.809 kb on + strandat 143.935 kb on + strand, within GFF4138at 143.936 kb on - strand, within GFF4138at 143.983 kb on + strand, within GFF4138at 144.282 kb on - strandat 144.356 kb on + strandat 144.356 kb on + strandat 144.357 kb on - strandat 144.357 kb on - strandat 144.378 kb on - strandat 144.378 kb on - strandat 144.378 kb on - strandat 144.494 kb on + strand, within GFF4139at 144.497 kb on + strand, within GFF4139at 144.497 kb on + strand, within GFF4139at 144.497 kb on + strand, within GFF4139at 144.498 kb on - strand, within GFF4139at 144.498 kb on - strand, within GFF4139at 144.609 kb on - strand, within GFF4139at 144.609 kb on - strand, within GFF4139at 144.659 kb on + strand, within GFF4139at 144.689 kb on + strand, within GFF4139at 144.690 kb on - strand, within GFF4139at 144.690 kb on - strand, within GFF4139at 144.791 kb on + strand, within GFF4139at 144.791 kb on + strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.792 kb on - strand, within GFF4139at 144.794 kb on + strand, within GFF4139at 144.794 kb on + strand, within GFF4139at 144.794 kb on + strand, within GFF4139at 144.795 kb on - strand, within GFF4139at 144.879 kb on - strand, within GFF4139at 144.879 kb on - strand, within GFF4139at 144.879 kb on - strand, within GFF4139

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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142,779 + -0.0
142,828 + +0.7
142,828 + -0.5
142,829 - -0.2
142,902 + GFF4137 0.15 +0.3
142,975 - GFF4137 0.33 +0.4
143,190 + GFF4137 0.85 -0.6
143,190 + GFF4137 0.85 -0.5
143,191 - GFF4137 0.85 +0.2
143,191 - GFF4137 0.85 +0.3
143,191 - GFF4137 0.85 -0.2
143,204 - GFF4137 0.88 -0.3
143,469 + -0.6
143,487 + +0.0
143,487 + +0.4
143,487 + +0.1
143,488 - +0.2
143,488 - -0.6
143,488 - +0.2
143,534 - -1.8
143,534 - -2.1
143,535 + -0.7
143,535 + -0.2
143,536 - -1.8
143,586 + +0.4
143,586 + +0.4
143,741 - +0.0
143,741 - +0.4
143,741 - -1.1
143,741 - -0.1
143,809 + +0.7
143,935 + GFF4138 0.36 +2.4
143,936 - GFF4138 0.37 -0.1
143,983 + GFF4138 0.47 +0.5
144,282 - +0.0
144,356 + -0.6
144,356 + -0.4
144,357 - +0.0
144,357 - -1.0
144,378 - -0.3
144,378 - -0.5
144,378 - -0.6
144,494 + GFF4139 0.14 +0.4
144,497 + GFF4139 0.14 +0.2
144,497 + GFF4139 0.14 +0.3
144,497 + GFF4139 0.14 +1.2
144,498 - GFF4139 0.14 +0.6
144,498 - GFF4139 0.14 +0.2
144,609 - GFF4139 0.19 -0.8
144,609 - GFF4139 0.19 -2.6
144,659 + GFF4139 0.22 -1.0
144,689 + GFF4139 0.23 -0.3
144,690 - GFF4139 0.23 -0.3
144,690 - GFF4139 0.23 -0.3
144,791 + GFF4139 0.28 -0.8
144,791 + GFF4139 0.28 -0.9
144,792 - GFF4139 0.28 +0.3
144,792 - GFF4139 0.28 +0.4
144,792 - GFF4139 0.28 -0.6
144,792 - GFF4139 0.28 -0.1
144,792 - GFF4139 0.28 -2.1
144,792 - GFF4139 0.28 -0.1
144,794 + GFF4139 0.28 -1.8
144,794 + GFF4139 0.28 +0.5
144,794 + GFF4139 0.28 +0.5
144,795 - GFF4139 0.28 -0.6
144,879 - GFF4139 0.32 +0.3
144,879 - GFF4139 0.32 -0.2
144,879 - GFF4139 0.32 +0.0

Or see this region's nucleotide sequence