Strain Fitness in Xanthobacter sp. DMC5 around GFF4133

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4131 and GFF4132 overlap by 32 nucleotidesGFF4132 and GFF4133 are separated by 566 nucleotidesGFF4133 and GFF4134 are separated by 31 nucleotides GFF4131 - hypothetical protein, at 136,134 to 136,517 GFF4131 GFF4132 - PTS system mannose-specific EIIAB component, at 136,486 to 136,887 GFF4132 GFF4133 - Adaptive-response sensory-kinase SasA, at 137,454 to 139,214 GFF4133 GFF4134 - Transcriptional regulatory protein BaeR, at 139,246 to 139,944 GFF4134 Position (kb) 137 138 139 140Strain fitness (log2 ratio) -2 -1 0 1at 136.491 kb on + strandat 136.492 kb on - strandat 136.523 kb on + strandat 136.523 kb on + strandat 136.524 kb on - strandat 136.767 kb on + strand, within GFF4132at 140.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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136,491 + -2.6
136,492 - -1.9
136,523 + -0.3
136,523 + -0.8
136,524 - -0.8
136,767 + GFF4132 0.70 +0.2
140,123 - -0.7

Or see this region's nucleotide sequence