Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4114 and GFF4115 overlap by 4 nucleotides GFF4115 and GFF4116 are separated by 146 nucleotides
GFF4114 - HTH-type transcriptional regulator TrpI, at 108,903 to 109,832
GFF4114
GFF4115 - hypothetical protein, at 109,829 to 110,995
GFF4115
GFF4116 - hypothetical protein, at 111,142 to 112,674
GFF4116
Position (kb) 109
110
111 Strain fitness (log2 ratio) -2
-1
0
1 at 109.024 kb on + strand, within GFF4114 at 109.037 kb on + strand, within GFF4114 at 109.038 kb on - strand, within GFF4114 at 109.085 kb on + strand, within GFF4114 at 109.293 kb on + strand, within GFF4114 at 109.293 kb on + strand, within GFF4114 at 109.422 kb on + strand, within GFF4114 at 109.422 kb on + strand, within GFF4114 at 109.423 kb on - strand, within GFF4114 at 109.547 kb on - strand, within GFF4114 at 109.575 kb on + strand, within GFF4114 at 109.575 kb on + strand, within GFF4114 at 109.575 kb on + strand, within GFF4114 at 109.999 kb on + strand, within GFF4115 at 110.059 kb on + strand, within GFF4115 at 110.059 kb on + strand, within GFF4115 at 110.060 kb on - strand, within GFF4115 at 110.060 kb on - strand, within GFF4115 at 110.060 kb on - strand, within GFF4115 at 110.070 kb on + strand, within GFF4115 at 110.070 kb on + strand, within GFF4115 at 110.070 kb on + strand, within GFF4115 at 110.071 kb on - strand, within GFF4115 at 110.265 kb on + strand, within GFF4115 at 111.117 kb on + strand at 111.118 kb on - strand at 111.254 kb on + strand at 111.255 kb on - strand at 111.255 kb on - strand at 111.462 kb on + strand, within GFF4116 at 111.463 kb on - strand, within GFF4116 at 111.584 kb on - strand, within GFF4116
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 109,024 + GFF4114 0.13 +0.2 109,037 + GFF4114 0.14 +0.6 109,038 - GFF4114 0.15 -2.2 109,085 + GFF4114 0.20 +0.6 109,293 + GFF4114 0.42 +0.8 109,293 + GFF4114 0.42 +0.7 109,422 + GFF4114 0.56 -1.4 109,422 + GFF4114 0.56 -0.2 109,423 - GFF4114 0.56 +0.0 109,547 - GFF4114 0.69 -0.5 109,575 + GFF4114 0.72 +0.4 109,575 + GFF4114 0.72 +1.4 109,575 + GFF4114 0.72 +0.2 109,999 + GFF4115 0.15 -0.2 110,059 + GFF4115 0.20 -0.2 110,059 + GFF4115 0.20 -1.2 110,060 - GFF4115 0.20 -0.3 110,060 - GFF4115 0.20 -0.2 110,060 - GFF4115 0.20 -0.1 110,070 + GFF4115 0.21 -0.2 110,070 + GFF4115 0.21 +0.6 110,070 + GFF4115 0.21 -0.6 110,071 - GFF4115 0.21 -0.7 110,265 + GFF4115 0.37 -1.0 111,117 + -0.0 111,118 - -0.3 111,254 + -0.5 111,255 - -0.4 111,255 - +1.4 111,462 + GFF4116 0.21 -1.1 111,463 - GFF4116 0.21 -0.6 111,584 - GFF4116 0.29 +0.3
Or see this region's nucleotide sequence